| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,599,247 – 12,599,341 |
| Length | 94 |
| Max. P | 0.590481 |
| Location | 12,599,247 – 12,599,341 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 67.99 |
| Shannon entropy | 0.56281 |
| G+C content | 0.43057 |
| Mean single sequence MFE | -24.27 |
| Consensus MFE | -7.30 |
| Energy contribution | -7.30 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.590481 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12599247 94 - 23011544 AGCACAAAUUUACCAUUUUUUAUGGUAAACAUAUUGAAGAGGAA--C---ACUGCUCUUU---UCGG-------UUGGGUUCGUUUCGGUUCGGUAUCUCCGGACACUG .(.((...((((((((.....))))))))((.((((((((((..--.---.....)))))---))))-------))).)).)......((((((.....)))))).... ( -23.70, z-score = -1.83, R) >droPer1.super_1 4811171 82 - 10282868 AGCACAAAUUUACCAUUUUUUAUGGUAAACAUA---UUGAAGAGUCCC--UCUCCCUCUC--------------UCCA-----UCUCUCUUUAAG---CCCGGCUGUUG (((.....((((((((.....))))))))....---((((((((....--..........--------------....-----...)))))))).---....))).... ( -15.60, z-score = -2.76, R) >droAna3.scaffold_12916 3375696 93 + 16180835 AGCUCAAAUUUACCAUUUUUUAUGGUAAACAUAUUUUUAAGAGGCUCG--UUCUCCACUC--------------UUCGGGGAUGCUGGCAUCGCGUCCUCCGGCUGCUG (((.....((((((((.....)))))))).........(((((.....--.......)))--------------))(((((((((.......)))))).)))))).... ( -26.20, z-score = -2.35, R) >droEre2.scaffold_4929 13816346 109 + 26641161 AGCACAAAUUUACCAUUUUUUAUGGUAAACAUAUUGAAGAGCCACUCCGUUCUGCCCUUUAGCUUGGGGUUGCUUUCAGUUUGGCUCUGCUCAGUUGCACCGGACACUG ........((((((((.....)))))))).....(((.((((.((((((..(((.....)))..)))))).)))))))((((((...(((......))))))))).... ( -31.20, z-score = -1.83, R) >droSec1.super_16 784276 94 - 1878335 AGCACAAAUUUACCAUUUUUUAUGGUAAACAUAUUGAAGGGGAA--C---UCUGCUCUUU---UCGG-------UUGGGUUCGUUUCGGUUUGGUAUCUCCGGACACUG ........((((((((.....)))))))).....(((((.(.((--(---((.(((....---..))-------).)))))).)))))((((((.....)))))).... ( -23.90, z-score = -1.82, R) >droSim1.chr2L 12403918 96 - 22036055 AGCACAAAUUUACCAUUUUUUAUGGUAAACAUAUUGAAGGGGAACUC---UCUGCUCUUU---UCGG-------UUGGGUUCGUUUCGGUUCGGUAUCUCCGGACACUG ........((((((((.....)))))))).....(((((.(.(((((---...(((....---..))-------).)))))).)))))((((((.....)))))).... ( -25.00, z-score = -2.08, R) >consensus AGCACAAAUUUACCAUUUUUUAUGGUAAACAUAUUGAAGAGGAACUC___UCUGCCCUUU___UCGG_______UUCGGUUCGUCUCGGUUCGGUAUCUCCGGACACUG ........((((((((.....))))))))................................................................................ ( -7.30 = -7.30 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:35:30 2011