| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,584,615 – 12,584,725 |
| Length | 110 |
| Max. P | 0.537993 |
| Location | 12,584,615 – 12,584,725 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 77.98 |
| Shannon entropy | 0.41131 |
| G+C content | 0.34647 |
| Mean single sequence MFE | -23.09 |
| Consensus MFE | -12.13 |
| Energy contribution | -12.27 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.537993 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12584615 110 + 23011544 ------AACCAGUAGCAUUACAGAUUUAUUUAAUGUAAGGAAAGGCUCCUAUCAAAAUCGUAAAAUCGCUAUUAUCUUUGGCAUAACAAUCAUUUGGAAUAUUUUAUGCCGCUGUU ------...(((..((((.....((((....((((..((((.....)))).................((((.......))))........))))..)))).....))))..))).. ( -19.30, z-score = -0.53, R) >droAna3.scaffold_12916 3360972 116 - 16180835 UAGUAAAAACAGUAGCACUUCCGGCAAACUACUUCAAAUCUAAUAUCCACAUAUUAGCAGCAAUUGCGCCAUUAGUUUUGGCAUAACAAUCAUUUCGUUGAUUUUAUGCCACUAUU ((((.(((((((.....))...(((..............(((((((....)))))))..((....)))))....)))))(((((((.(((((......)))))))))))))))).. ( -26.10, z-score = -3.70, R) >droEre2.scaffold_4929 13801323 110 - 26641161 ------AACCAGUAGCAUUUGUGAUUCAUUUAUUACAAGAGAAGGCCCCUAUCAAAAUCGCAAAGUCGCCAUUACUUUUGGCAUAACAAUCAUUUGGAAUAUUUUAUGCCGCUGUU ------...(((..((((.....((((..((((..(((((((((((..((.............))..))).)).))))))..))))(((....))))))).....))))..))).. ( -22.72, z-score = -1.32, R) >droYak2.chr2L 9018969 110 + 22324452 ------AAACAGUAGCAUUUCUGUUUUAUUUAUUAUAAGGGCUGGUCGUUAUCAAAACCGCAAAAUCGCCAUUAUCUUUGGCAUAACAAUCAUUUGGAAUACUUUAUGCCGCUGUU ------.(((((..((((...(((((((............((.(((..........)))))......((((.......))))............)))))))....))))..))))) ( -22.90, z-score = -1.39, R) >droSec1.super_16 769681 108 + 1878335 ------AUCCAGUAGCAUUACAGAUGUACA-GAUGUA-GGAAAGGCUCCUAUCAAAAUCGCAAAAUCGCCAUUAUCUUUGGCAUAACAAUCAUUUGGAAUAUUUUAUGCCGCUGUU ------...(((..((((...((((((.((-((((((-(((.....)))))................((((.......))))........))))))..)))))).))))..))).. ( -27.40, z-score = -2.52, R) >droSim1.chr2L 12388875 110 + 22036055 ------AACCAGUAGCAUUACAGAUGUAUUUAAUGUAAGGAAAGGCUCCUAUCAAAAUCGCAAAAUCGCUAUUAUCUUUGGCAUAACAAUCAUUUGGAAUAUUUUAUGCCGCUGUU ------...(((..((((...((((((.(..((((..((((.....)))).................((((.......))))........))))..).)))))).))))..))).. ( -20.10, z-score = -0.33, R) >consensus ______AACCAGUAGCAUUACAGAUUUAUUUAAUGUAAGGAAAGGCCCCUAUCAAAAUCGCAAAAUCGCCAUUAUCUUUGGCAUAACAAUCAUUUGGAAUAUUUUAUGCCGCUGUU .........((((.((((.................................................((((.......))))....(((....))).........)))).)))).. (-12.13 = -12.27 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:35:30 2011