| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,563,568 – 12,563,675 |
| Length | 107 |
| Max. P | 0.733000 |
| Location | 12,563,568 – 12,563,675 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 50.48 |
| Shannon entropy | 0.80699 |
| G+C content | 0.40251 |
| Mean single sequence MFE | -25.75 |
| Consensus MFE | -5.38 |
| Energy contribution | -6.38 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.21 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.733000 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12563568 107 - 23011544 AAAUAAUUUAGCGGACUUUGACAGGGUGCCUGAUAUCGUAAAAUCGAUCAGGGAAUUCUCUGGAAAUCCAGCAGAAUUCGGGUCUUGGAAAAAGAGCGUUGAUAGAA .......((((((..((((..(((((..(((((..(((......))))))))(((((((((((....)))).)))))))...)))))...))))..))))))..... ( -34.70, z-score = -3.40, R) >droAna3.scaffold_13034 672067 94 - 2223656 -------------GACUUAGAUCGGGUACCAGAUAUAGUGAAGUGCAUGAAGGAAUUUUCGGGAAAGCCCACAGAAUUUAGUUCGUGGACAAAAACGGUAGAUCGAG -------------......((((((...))...(((.((...((.((((((.(((((((.(((....)))..)))))))..)))))).))....)).)))))))... ( -21.30, z-score = -1.18, R) >droWil1.scaffold_180772 5684539 98 + 8906247 AGAUAAUUGGAAUGAGGUAGAUAAAGUUCCAGACUUAGUGAAAGAUCUAAAAGAAUUCUCUGGUAAUCCAGCAGAAUUUACAACUUGGUUCGCUUCAA--------- ............(((((..(((.(((((..((((((.....))).)))....(((((((((((....)))).)))))))..))))).)))..))))).--------- ( -24.20, z-score = -1.80, R) >anoGam1.chrX 5467105 89 - 22145176 -------------GAGCUUGGAAAAGUUCCCGAUUUUGUAAAAGAUCUUCGAGAAUUCGAUGGUCGACAUACAGAGCUAAUGAACUGGAUAGCAGAUGUGGA----- -------------((((((....))))))(((..(((((....((((.(((......))).))))......(((..(....)..)))....)))))..))).----- ( -22.80, z-score = -1.46, R) >consensus _____________GACUUAGAUAAAGUUCCAGAUAUAGUAAAAGAUAUAAAAGAAUUCUCUGGAAAUCCAACAGAAUUUAGGACUUGGAUAAAAACAGU_GA_____ ....................................................(((((((((((....)))).)))))))............................ ( -5.38 = -6.38 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:35:28 2011