| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,510,769 – 12,510,876 |
| Length | 107 |
| Max. P | 0.958630 |
| Location | 12,510,769 – 12,510,876 |
|---|---|
| Length | 107 |
| Sequences | 7 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 76.79 |
| Shannon entropy | 0.42001 |
| G+C content | 0.42879 |
| Mean single sequence MFE | -30.39 |
| Consensus MFE | -17.78 |
| Energy contribution | -18.83 |
| Covariance contribution | 1.05 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.66 |
| SVM RNA-class probability | 0.958630 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12510769 107 + 23011544 UUUUUGUUUUGUGGCCGCCGUUUGGAUUGUUGCACUUUUAUUUUGGAAUAGACUGGGGGCACUUGCCUAUGCAAUUAUUCGAGCUGGGCGGCAACACUUUUCUUUUU------- .........(((.((((((((((((((.((((((..((((((....))))))....((((....)))).)))))).))))))))..)))))).)))...........------- ( -35.90, z-score = -3.63, R) >droSim1.chr2L 12319824 109 + 22036055 -----GUUUUGUAGCCGUCGGUUGGAUUGUUGCACUUUUAUUUUGGAAUAGACUGGGCGCACUUGCCUAUGCAAUUAUUCGAGCUGGGCGGCAACACUUUUCUUUUGGUGUUUA -----........((((((((((.((..((((((..((((((....)))))).((((((....))))))))))))...)).)))).))))))((((((........)))))).. ( -35.40, z-score = -2.92, R) >droSec1.super_16 701318 107 + 1878335 -----GUUUUGUAGCCGUCGGUUGGAUUGUUGCACUUUUAUUUUGGAAUAGACUGGGCGCACUUGCCUGUGCAAUUAUUCGAGCUGGGCGGCAACACUUUUCUUUUGGUGUU-- -----........((((((((((.((..(((((((.((((((....))))))..(((((....))))))))))))...)).)))).))))))((((((........))))))-- ( -37.60, z-score = -3.27, R) >droYak2.chr2L 8949133 106 + 22324452 -----GUUUUGUGGCCGCCGGUUGGAUUGUUGCACUUUUAUUUUGGGAUUGACUGGGCA-ACUUGCCUAUGCAAUUAUUCCAGCUGGGCGGUAACACUUUUCUUUCAGUUUU-- -----....(((.(((((((((((((..((((((((........)).......(((((.-....)))))))))))...))))))).)))))).)))................-- ( -36.90, z-score = -3.52, R) >droEre2.scaffold_4929 13732916 107 - 26641161 -----CUUUUGUGGCCGCCGGUUGGAUUGUUGCACUUUUAUUUUGGCAUAGACUGGGGA-ACUUGCCUAUGCAAUUAUUUCAGCUGGGCGGCAACACUUUUCUUUAAGUUUUU- -----....(((.(((((((((((((..((((((..........((((......((...-.))))))..))))))...))))))).)))))).))).................- ( -32.60, z-score = -2.36, R) >dp4.chr4_group3 3216930 95 + 11692001 ------GUUUUCAAUUGCC-UCUGG--CGUUGGGUUUUUUUUCUUGUAUC--UUGGGAA---UUGCCUAUGCAAUUAUUCGAAAUGGGCGGCAACACUUUUCUUUUCUU----- ------........(((((-.((.(--(((.((((....(((((......--..)))))---..)))))))).(((......))).)).)))))...............----- ( -16.70, z-score = 0.29, R) >droPer1.super_1 4698441 95 + 10282868 ------GUUUUCAAUUGCC-UCUGG--CGUUGGGUUUUUUUUCUUGCAUC--UUGGGAA---UUGCCUAUGCAAUUAUUCGAAAUGGGCGGCAACACUUUUCUUUUCUG----- ------........(((((-.((.(--..((((((........((((((.--..(((..---...)))))))))..))))))..).)).)))))...............----- ( -17.60, z-score = 0.28, R) >consensus _____GUUUUGUAGCCGCCGGUUGGAUUGUUGCACUUUUAUUUUGGAAUAGACUGGGCA_ACUUGCCUAUGCAAUUAUUCGAGCUGGGCGGCAACACUUUUCUUUUAGU_UU__ .........(((.((((((((((((((.((((((((........)).......((((........)))))))))).)))).)))).)))))).))).................. (-17.78 = -18.83 + 1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:35:25 2011