| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,502,909 – 12,502,967 |
| Length | 58 |
| Max. P | 0.913832 |
| Location | 12,502,909 – 12,502,967 |
|---|---|
| Length | 58 |
| Sequences | 7 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 74.05 |
| Shannon entropy | 0.51685 |
| G+C content | 0.38391 |
| Mean single sequence MFE | -10.79 |
| Consensus MFE | -5.75 |
| Energy contribution | -7.01 |
| Covariance contribution | 1.27 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.913832 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12502909 58 - 23011544 UUAUCA-ACUUCGAUUUGCGAGAGCGAUC-UUUUUCGCUUGAAUGCAACUUUGCCUAUAA- ......-....(((.(((((.((((((..-....))))))...)))))..))).......- ( -12.50, z-score = -1.76, R) >droSim1.chr2L 12311814 58 - 22036055 UUAUCA-ACUUCGAUUUGCGAGAGCGAUC-UUUUUCGCUUGAAUGCAACUUUGCCUAUAA- ......-....(((.(((((.((((((..-....))))))...)))))..))).......- ( -12.50, z-score = -1.76, R) >droSec1.super_16 693590 58 - 1878335 UUAUCA-ACUUCGAUUUGCGAGAGCGAUC-UUUUUCGCUUGAAUGCAACUUUGCCUAUAA- ......-....(((.(((((.((((((..-....))))))...)))))..))).......- ( -12.50, z-score = -1.76, R) >droYak2.chr2L 8941112 58 - 22324452 UUAUCA-ACUUCGAUUUGCGAGAGCGAUC-UUUUUCGCUUGAAUGCAACUUUGCCUAUAA- ......-....(((.(((((.((((((..-....))))))...)))))..))).......- ( -12.50, z-score = -1.76, R) >droEre2.scaffold_4929 13725090 58 + 26641161 UUAUCA-ACUUCGAUUUGCGAGAGCGAUC-UUUUUCGCUUGAAUGCAACUUUACCUAUAA- ......-........(((((.((((((..-....))))))...)))))............- ( -12.30, z-score = -2.53, R) >droAna3.scaffold_12916 3287048 58 + 16180835 ACACCACACACCCACUUGGAAUCAGCAAC-CUAUUCGCUUGAAUGCAAUUCUGACU-UAA- ...........((....))..((((....-.(((((....))))).....))))..-...- ( -5.50, z-score = -0.55, R) >droMoj3.scaffold_6500 28150500 61 + 32352404 UUACCAGCUGGAAUAAUACAACAGCCAUCGAGACAAACUCAAAUGUCAAUUUAAGCAUCAG ......((((...........))))......((((........)))).............. ( -7.70, z-score = -1.46, R) >consensus UUAUCA_ACUUCGAUUUGCGAGAGCGAUC_UUUUUCGCUUGAAUGCAACUUUGCCUAUAA_ ...............(((((.((((((.......))))))...)))))............. ( -5.75 = -7.01 + 1.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:35:24 2011