| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,491,278 – 12,491,394 |
| Length | 116 |
| Max. P | 0.640109 |
| Location | 12,491,278 – 12,491,394 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 65.69 |
| Shannon entropy | 0.61384 |
| G+C content | 0.33244 |
| Mean single sequence MFE | -22.84 |
| Consensus MFE | -10.34 |
| Energy contribution | -11.58 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.640109 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12491278 116 - 23011544 AUGCAUAAGAAGUGCUCAAGAAUCGGUUAUUUAUAGUGACUGAUUUUAAAUGGUCGCAUUAUAGUGUAGUUCAUGUUCUUCAUA--UAACUAGUAAAGUCACAGCGCGAGUCGCAAUU .(((....((((.((...((((((((((((.....))))))))))))..((((..((((....))))...)))))).))))...--.................((....)).)))... ( -24.70, z-score = -0.59, R) >droWil1.scaffold_180708 10258762 101 - 12563649 ------UGGCAGAACUAAAUCAACUGAAAAUCAUUUUACUAUAUCACAAUGUUAAGAAUUAAAACGU--CUUAUAUAUGGAAUAAACAGACAGUAAUGUGUCAGAGUUG--------- ------..............(((((.............((((((....(((((.........)))))--.....))))))........((((......))))..)))))--------- ( -10.70, z-score = 1.28, R) >droSim1.chr2L 12300281 104 - 22036055 AUGCAUAAGAAGCGCUCAAGAAUCAGUUAUUUAUAGUGAUUGAUUUUAAAUGGUCGCAUUAUAGUGCAGUUCAUGUUCUUCUUA--UAACUAGUAAAGUCGCAAUU------------ .(((((((((((.((...((((((((((((.....))))))))))))..((((..((((....))))...)))))).)))))))--).(((.....))).)))...------------ ( -26.30, z-score = -2.87, R) >droYak2.chr2L 8928649 114 - 22324452 AUGCAUAAGAA--GCUCAAGAAUCAGUUAUUUAUAGUGACUGAUUAUAAAUGGUGGCAUUAGAGUGUAGUUCAUGCUAUUCAUA--UAGCUAGGAAAGUCACAGUCCAAGUCGCAAUU .(((.......--(((....((((((((((.....))))))))))......)))(((.((.((.(((..(((..(((((....)--))))...)))....))).)).))))))))... ( -27.80, z-score = -1.87, R) >droEre2.scaffold_4929 13713144 116 + 26641161 AUGCAUAAGAA--GCCCAAGAAUCAGUUAUUUAUAGUGACUGAUUUUAAAUGGUGGCAUUAUAGUGCAGUUCAUGUUGUUCAUAGUAAACUAGUAAAGUCGCAGUCCAAGUCGCAAUU .(((.......--.....((((((((((((.....)))))))))))).....(((((.((((.(.((((......)))).).(((....))))))).)))))..........)))... ( -24.70, z-score = -1.47, R) >consensus AUGCAUAAGAAG_GCUCAAGAAUCAGUUAUUUAUAGUGACUGAUUUUAAAUGGUCGCAUUAUAGUGUAGUUCAUGUUCUUCAUA__UAACUAGUAAAGUCACAGUCCAAGUCGCAAUU ........((((.((...((((((((((((.....))))))))))))..((((..((((....))))...)))))).))))..................................... (-10.34 = -11.58 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:35:24 2011