| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,490,501 – 12,490,592 |
| Length | 91 |
| Max. P | 0.668719 |
| Location | 12,490,501 – 12,490,592 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 69.35 |
| Shannon entropy | 0.53579 |
| G+C content | 0.27685 |
| Mean single sequence MFE | -10.20 |
| Consensus MFE | -4.70 |
| Energy contribution | -5.34 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.668719 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12490501 91 + 23011544 UGCGGAAUCGCAUCAAAUCUAUUAAUCAUCUUAAUAGAUUUUUGUUAA-UUACCAACUUGUAUACUUGCACACAUAA--AAACACAACUUACAC ((((....))))..(((((((((((.....))))))))))).......-.........((((....)))).......--............... ( -12.40, z-score = -2.52, R) >droEre2.scaffold_4929 13712424 77 - 26641161 -----UGCAAAAUCAAAUCCUUUAAUC---UUAAUAGAUUUUAUUUAAAUUACCAACAUGUGUGCA---------AUGCUAACCUAACUUACAC -----((((((((.(((((..(((...---.)))..))))).))))....(((......)))))))---------................... ( -5.80, z-score = -0.22, R) >droYak2.chr2L 8927898 78 + 22324452 UGCGAAUUCGCAUCAAAUCUUUUAAUC---UUGACAGAUUUUUUUCCA-----UCACUUAUAUACA-------AUAA-UAAACCUAACGUUUAG ((((....))))..((((((.(((...---.))).)))))).......-----.............-------....-(((((.....))))). ( -8.30, z-score = -1.90, R) >droSec1.super_16 681368 91 + 1878335 UGAGGAAUCGCAUCAAAUCAAUUAAUCAUCUUAAUAGAUUUUUGUUAA-UUACUAACUUGCGUACUUGUAUAUGUAU--AAACACAACUUACAC .(((....((((..(((((.(((((.....))))).)))))..((((.-....)))).))))..)))(((..(((..--....)))...))).. ( -11.10, z-score = -0.43, R) >droSim1.chr2L 12299513 93 + 22036055 UGCGGAAUCGCAUCAAAUCUAUUAAUCAACUUAAUAGAUUUUUGUUAA-UUACCAACUUGUAUACUUGUAUAUAUAUAUAAACACAACUUACAC ((((....))))..(((((((((((.....))))))))))).......-.........((((((....)))))).................... ( -13.40, z-score = -2.18, R) >consensus UGCGGAAUCGCAUCAAAUCUAUUAAUCA_CUUAAUAGAUUUUUGUUAA_UUACCAACUUGUAUACUUG_A_A_AUAU__AAACACAACUUACAC ..............(((((((((((.....)))))))))))..................................................... ( -4.70 = -5.34 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:35:23 2011