| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,489,203 – 12,489,294 |
| Length | 91 |
| Max. P | 0.706181 |
| Location | 12,489,203 – 12,489,294 |
|---|---|
| Length | 91 |
| Sequences | 8 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 77.00 |
| Shannon entropy | 0.41393 |
| G+C content | 0.29034 |
| Mean single sequence MFE | -13.01 |
| Consensus MFE | -6.74 |
| Energy contribution | -6.74 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.706181 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12489203 91 - 23011544 AACCUUGACAUUGUCUUAAUGUCAAAUCAUGAUAAAUG------------AAACGAAAUG---CAA-AACAGUAUGCAACAAUUAAUCUUUCGUACCUUCUUCUAUA ....(((((((((...))))))))).((((.....)))------------).((((((((---((.-.......))))..........))))))............. ( -14.60, z-score = -2.32, R) >droSim1.chr2L 12298184 91 - 22036055 AACCUUGACAUUGUCUUAAUGUCAAAUCAUGAUAAAUG------------AAACGAAAUG---CAA-AACAGUAUGCAACAAUUAAUCUUUCGUACCUUCUACUAUA ....(((((((((...))))))))).((((.....)))------------).((((((((---((.-.......))))..........))))))............. ( -14.60, z-score = -2.37, R) >droSec1.super_16 680044 91 - 1878335 AACCUUGACAUUGUCUUAAUGUCAAAUCAUGAUAAAUG------------AAACGAAAUG---CAA-AACAGUAUGCAACAAUUAAUCUUUCGUACCUUCUACUAUA ....(((((((((...))))))))).((((.....)))------------).((((((((---((.-.......))))..........))))))............. ( -14.60, z-score = -2.37, R) >droYak2.chr2L 8926504 91 - 22324452 AACCUUGACAUUGUCUUAAUGUCAAGUCAUGAUAAAUG------------AACCGAAAUG---CAA-AACAGUAUGCAACAAUUAAUCUUCCGUACCUUCUUCUAUG ...((((((((((...))))))))))((((.....)))------------).......((---((.-.......))))............................. ( -14.30, z-score = -1.93, R) >droEre2.scaffold_4929 13711109 91 + 26641161 AACCUUGACAUUGUCUUAAUGUCAAGUCAUGAUAAAUG------------AAACGAAAUG---CAA-AACAGUAUGCAACAAUUAAUCUUUCCUACCUUCUUCUAUG ...((((((((((...))))))))))((((.....)))------------).......((---((.-.......))))............................. ( -14.30, z-score = -2.20, R) >droAna3.scaffold_12916 3273526 100 + 16180835 AACCUUGACAUUAAAGCAAUGUCAAAUUUUGACAAAUGGAACAAAAAUACAAAAAAAAUACCAAAACAAGAAUACAAAAUAAUUAAUCUCUUGUACCUUC------- ....((((((((.....))))))))........................................((((((.................))))))......------- ( -10.43, z-score = -1.42, R) >dp4.chr4_group3 3187671 86 - 11692001 AACCUUGACAUUAAGACAAUGUCAAAAAAUGAUAAAUGG----------UAAACGAAAUGCAACAA-AAAAUAAUGCCAUAAUUAAUAUUUCGUACA---------- ....((((((((.....))))))))..............----------...((((((((((....-.......)))..........)))))))...---------- ( -11.00, z-score = -1.22, R) >droPer1.super_1 4668327 86 - 10282868 AACCUUGACAUUAAGACAAUGUCAAAAAAUGAUAAAUGG----------UAAACGAAAUGCAACAA-AAAAUAAUGCCAUAAUUAAUCUUUCGUACA---------- ....((((((((.....))))))))..........((((----------((...............-.......)))))).................---------- ( -10.25, z-score = -0.92, R) >consensus AACCUUGACAUUGUCUUAAUGUCAAAUCAUGAUAAAUG____________AAACGAAAUG___CAA_AACAGUAUGCAACAAUUAAUCUUUCGUACCUUCU_CUAU_ ....((((((((.....)))))))).................................................................................. ( -6.74 = -6.74 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:35:22 2011