| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,416,152 – 12,416,245 |
| Length | 93 |
| Max. P | 0.988648 |
| Location | 12,416,152 – 12,416,245 |
|---|---|
| Length | 93 |
| Sequences | 10 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 83.36 |
| Shannon entropy | 0.34264 |
| G+C content | 0.40719 |
| Mean single sequence MFE | -24.57 |
| Consensus MFE | -21.52 |
| Energy contribution | -21.72 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.33 |
| SVM RNA-class probability | 0.988648 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12416152 93 + 23011544 ----------UUUCUCCCGAUCCCGAAAUGUGACAAUCGUGUCACGUACUCAAUGUUCUGGAAGAUUGAACGUUACGUUUGUCGCGUUUAAAAUGAGUUUUUU ----------...(((.((....))(((((((((((.((((..((((..(((((.((....)).))))))))))))).))))))))))).....)))...... ( -25.00, z-score = -2.31, R) >droSim1.chr2L 12221869 93 + 22036055 ----------UUUCUCCCGAUCCCGAAAUGUGACAAUCGUGUCACGUACUCAAUGUUCUGGAAGAUUGAACGUUACGUUUGUCGCGUUUAAAAUGAGUUUUUU ----------...(((.((....))(((((((((((.((((..((((..(((((.((....)).))))))))))))).))))))))))).....)))...... ( -25.00, z-score = -2.31, R) >droSec1.super_16 606866 77 + 1878335 ----------UUUCUCCCGAUCCCGAAAUGUGACAAUCGUGUCACGUACUCAAUGUUCUGGAAGAUUGAACGUUACGUUUGUCGCGU---------------- ----------.................(((((((((.((((..((((..(((((.((....)).))))))))))))).)))))))))---------------- ( -21.30, z-score = -1.73, R) >droYak2.chr2L 8852411 93 + 22324452 ----------UUUCUCCCGAUCCCGAAAUGUGACAAUCGUGUCACGUACUCAAUGUUCUGGAAGAUUGAACGUUACGUUUGUCGCGUUUAAAAUGAGUUUUUU ----------...(((.((....))(((((((((((.((((..((((..(((((.((....)).))))))))))))).))))))))))).....)))...... ( -25.00, z-score = -2.31, R) >droEre2.scaffold_4929 13640762 93 - 26641161 ----------UUUCUCCCGAUCCCGAAAUGUGACAAUCGUGUCACGUACUCAAUGUUCUGGAAGAUUGAACGUUACGUUUGUCGCGUUUAAAAUGAGUUUUUU ----------...(((.((....))(((((((((((.((((..((((..(((((.((....)).))))))))))))).))))))))))).....)))...... ( -25.00, z-score = -2.31, R) >droAna3.scaffold_12916 3199096 93 - 16180835 ----------UCUCUCCCAUUCGCCAAAUGUGACAAUCGUGUCACGUACCCAAUGUUCUGGAAGAUUGAACGUUACGUUUGUCGCGUUUAAAAUGAGUUUUUU ----------........(((((..(((((((((((.((((..((((...((((.((....)).)))).)))))))).)))))))))))....)))))..... ( -22.60, z-score = -1.99, R) >dp4.chr4_group3 6019252 103 - 11692001 CCCUCCCCUUUUUGGUGGCGCUGCCAAAUGUGACAAUCGUGUCACGUACUCAAUGUUCUGGAAGAUUGAACGUUACGUUUGUCGCGUUUAAAAUGAGUUUUUU ..(((.((.....)).(((...)))(((((((((((.((((..((((..(((((.((....)).))))))))))))).))))))))))).....)))...... ( -28.30, z-score = -2.22, R) >droPer1.super_1 3118833 103 - 10282868 CCCUCCCCUUUUUGGUGGCGCUGCCAAAUGUGACAAUCGUGUCACGUACUCAAUGUUCUGGAAGAUUGAACGUUACGUUUGUCGCGUUUAAAAUGAGUUUUUU ..(((.((.....)).(((...)))(((((((((((.((((..((((..(((((.((....)).))))))))))))).))))))))))).....)))...... ( -28.30, z-score = -2.22, R) >droMoj3.scaffold_6500 22594673 78 + 32352404 -------------------------AAAUGUGACAAUCGUGUCACGUACGCAAUGUUCUGGAAGAUUGAACGUUACGUUUGUCGCGUUUAAAAUGAGUUUUUU -------------------------(((((((((((.((((..((((...((((.((....)).)))).)))))))).))))))))))).............. ( -22.60, z-score = -2.00, R) >droVir3.scaffold_12963 17547464 78 + 20206255 -------------------------AAAUGUGACAAUCGUGUCACGUACGCAAUGUUCUGGAAGAUUGAACGUUACGUUUGUCGCGUUUAAAAUGAGUUUUUU -------------------------(((((((((((.((((..((((...((((.((....)).)))).)))))))).))))))))))).............. ( -22.60, z-score = -2.00, R) >consensus __________UUUCUCCCGAUCCCGAAAUGUGACAAUCGUGUCACGUACUCAAUGUUCUGGAAGAUUGAACGUUACGUUUGUCGCGUUUAAAAUGAGUUUUUU .........................(((((((((((.((((..((((...((((.((....)).)))).)))))))).))))))))))).............. (-21.52 = -21.72 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:35:12 2011