| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,387,413 – 12,387,490 |
| Length | 77 |
| Max. P | 0.672451 |
| Location | 12,387,413 – 12,387,490 |
|---|---|
| Length | 77 |
| Sequences | 10 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 61.90 |
| Shannon entropy | 0.76569 |
| G+C content | 0.49398 |
| Mean single sequence MFE | -22.03 |
| Consensus MFE | -6.93 |
| Energy contribution | -6.92 |
| Covariance contribution | -0.01 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.672451 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12387413 77 - 23011544 ----AAAAACGGGUUAAAUGACCCGUUGGGCAACAGUGGGCACUGGAGACUCAACCGCAUU---CCC--AAGUUGGCCAGAACUCA---- ----...((((((((....))))))))((.((((..((((...(((........)))....---)))--).)))).))........---- ( -26.40, z-score = -1.72, R) >droSim1.chr2L 12192967 77 - 22036055 ----AAAAACGGGUUAAAUGACCCGUUGGGCAACAGUGGGCACUGGAGACUCAACCGCAUU---CCC--AAGUUGGCCAGAACUCA---- ----...((((((((....))))))))((.((((..((((...(((........)))....---)))--).)))).))........---- ( -26.40, z-score = -1.72, R) >droSec1.super_16 578297 77 - 1878335 ----AAAAACGGGUUAAAUGACCCGUUGGGCAACAGUGGGCACUGGAGACUUAACCGCAUU---CCC--AAGUUGGCCAGAACUCA---- ----...((((((((....))))))))((.((((..((((...(((........)))....---)))--).)))).))........---- ( -26.40, z-score = -1.88, R) >droYak2.chr2L 8823122 77 - 22324452 ----AAAAACGGGUUAAAUGACCCGUUGGGCAACAGUGGGCACUGGAGACUCGACCGCAUU---CCC--AACAUGGCCAGAACCCA---- ----......(((((...((.((.((((((.....((((.....(....)....))))...---)))--)))..)).)).))))).---- ( -27.00, z-score = -1.82, R) >droEre2.scaffold_4929 13612177 77 + 26641161 ----AAAAACGGGUUAAAUGACCCGUUGGGCAACAGUGGGCACUGGAGACUAGACCGCACU---CCC--AAGUUGGCCAGAACUCA---- ----...((((((((....))))))))((.((((..((((...(((........)))....---)))--).)))).))........---- ( -26.40, z-score = -1.62, R) >droAna3.scaffold_12916 3171166 83 + 16180835 ----AAAAACGGGUUAAAUGACCCGUUGGCCAGCUGUGAGUACUCGGAACUCAACCGCAUU---CCCCGGAGCUGGCCAGUCCGGACCCU ----...((((((((....))))))))((((((((.(((((.......))))).(((....---...)))))))))))............ ( -34.40, z-score = -3.28, R) >dp4.chr4_group3 5984796 86 + 11692001 AACCAUAAACGGGUUAAAUGACCCGUUAGCCAAGAGUGAGCAUUAAAAACCGAACCGUACCGCAUUCCAAACUUCGCUCCAGAGGA---- ..((...((((((((....))))))))......(((((((..........((........))..........)))))))....)).---- ( -19.95, z-score = -2.18, R) >droVir3.scaffold_12963 17500945 65 - 20206255 ----AAAAACGGGUUAAAUGACCUGGUAAUCAGC-------AUGAAAC--UCUAC-UUACAGUCCGAGCCAAGAGCCCA----------- ----......(((((...((..(((.....))).-------......(--((.((-.....))..))).))..))))).----------- ( -9.20, z-score = 0.71, R) >droMoj3.scaffold_6500 22543594 66 - 32352404 ----AAAGACGAGUUAAAUGACCUGGUAAUCAAC-------AUGAAAU--UCCGCUUUACAGUCUGAGCCAAGUGCUCA----------- ----..((((((((..(((..(.((........)-------).)..))--)..))))....))))((((.....)))).----------- ( -10.20, z-score = 0.16, R) >droGri2.scaffold_15252 14932641 79 - 17193109 ----AAAGGCGAGUUAAAUGACCUGAUAAUCAGCAGC---AAUGAAAUACUCUACUCUACUUACAACUCUGAGCAGCCUUUGCUCG---- ----((((((((((........(((.....)))((..---..))....))))..(((.............)))..)))))).....---- ( -13.92, z-score = -0.41, R) >consensus ____AAAAACGGGUUAAAUGACCCGUUGGGCAACAGUGGGCACUGGAGACUCAACCGCACU___CCC__AAGUUGGCCAGAACUCA____ .........((((((....))))))................................................................. ( -6.93 = -6.92 + -0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:35:10 2011