| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,386,888 – 12,386,978 |
| Length | 90 |
| Max. P | 0.644813 |
| Location | 12,386,888 – 12,386,978 |
|---|---|
| Length | 90 |
| Sequences | 8 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 83.09 |
| Shannon entropy | 0.31870 |
| G+C content | 0.50364 |
| Mean single sequence MFE | -32.55 |
| Consensus MFE | -14.64 |
| Energy contribution | -15.12 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.54 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.644813 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12386888 90 + 23011544 CACAUGUGUGUAUGUGUGGCAGCGAUUUUAAUGCAUUUGAAGUCAAAUUACGGGAUGCUAGGCACGCACACGCCAGCAAUAAGCUGGGGC------ .....(((((..(((.((((...((((((((.....))))))))..(((....))))))).)))..))))).(((((.....)))))...------ ( -32.40, z-score = -2.45, R) >droSim1.chr2L 12192445 86 + 22036055 ----GACAUGUGUGUGUGCCAGCGAUUUUAAUGCAUUUGAAGUCAAAUUACGGGAUGCUAGGCACGCACACGCCAGCAAUAAGCUGGGGC------ ----.....((((((((((((((((((((((.....))))))))..(((....)))))).))))))))))).(((((.....)))))...------ ( -38.30, z-score = -4.75, R) >droSec1.super_16 577775 86 + 1878335 ----CACAUGUGUGUGUGCCAGCGAUUUUAAUGCAUUUGAAGUCAAAUUACGGGAUGCUAGGCACGCACACGCCAGCAAUAAGCUGGGGC------ ----.....((((((((((((((((((((((.....))))))))..(((....)))))).))))))))))).(((((.....)))))...------ ( -38.30, z-score = -4.65, R) >droYak2.chr2L 8822597 86 + 22324452 ----UGCAUGUGUGUGCGCCAGCGAUUUUAAUGCAUUUGAAGUCAAAUUACGGGAUGCUAGGCACGCACACGCCAGCAAUAAGCUGCGGC------ ----.....(((((((.((((((((((((((.....))))))))..(((....)))))).))).)))))))(((.(((......))))))------ ( -32.30, z-score = -1.72, R) >droEre2.scaffold_4929 13611669 86 - 26641161 ----UACAUGUGUGAGUGCCAGCGAUUUUAAUGCAUUUGAAGUCAAAUUACGGGAUGCUGGGCACGCACACGCCAGCAAUAAGCUGGGGC------ ----.....(((((.((((((((((((((((.....))))))))..(((....)))))).))))).))))).(((((.....)))))...------ ( -34.50, z-score = -3.67, R) >droAna3.scaffold_12916 3170632 82 - 16180835 --------UAUUUGUGUGGCAGCGAUUUUAAUGCGUUUGAAGUCAAAUUACGGGAUGCCAAGCACGCACGAGGCAACAAUGAGCUUGGAC------ --------...(((((((((...((((((((.....)))))))).......((....))..)).)))))))(((........))).....------ ( -20.00, z-score = -0.28, R) >dp4.chr4_group3 5984248 92 - 11692001 ----CAUGUGUGUGGGUGUCAGCGAUUUUAAUGCAUUUGAAGUCGCAUUACGGGAUGCCAGUCACGCACGAGCCAGCAAUGAGCUUCGGGUAGCGC ----..((((((..((((((.((((((((((.....)))))))))).......))))))...))))))(((((((....)).)).)))........ ( -31.90, z-score = -1.28, R) >droPer1.super_1 3083578 92 - 10282868 ----CUUGUGUGUGGGUGUCAGCGAUUUUAAUGCAUUUGAAGUCGCAUUACGGGAUGCCAGUCACGCACGAGCCAGCAAUGAGCUUCGGGUAGCGC ----((((((((((((((((.((((((((((.....)))))))))).......))))))...)))))))))).((....)).(((......))).. ( -32.70, z-score = -1.49, R) >consensus ____CACAUGUGUGUGUGCCAGCGAUUUUAAUGCAUUUGAAGUCAAAUUACGGGAUGCUAGGCACGCACACGCCAGCAAUAAGCUGGGGC______ ........(((((((.((...((((((((((.....))))))))..(((....))))))).)))))))...((((((.....)))..)))...... (-14.64 = -15.12 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:35:10 2011