| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,382,756 – 12,382,846 |
| Length | 90 |
| Max. P | 0.651512 |
| Location | 12,382,756 – 12,382,846 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 59.48 |
| Shannon entropy | 0.70480 |
| G+C content | 0.53304 |
| Mean single sequence MFE | -24.75 |
| Consensus MFE | -11.64 |
| Energy contribution | -10.84 |
| Covariance contribution | -0.80 |
| Combinations/Pair | 1.86 |
| Mean z-score | -0.64 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.651512 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12382756 90 + 23011544 CUUCCUGCCGAUUGCCCCUCAUCCUGAAAAAUCCCCUGGGUGAGUUGGUGGGGGGGUGGGUGCAACUUUGCUGCAUAAUUGUGGAGCGGA ..((((((...(..((((((...(..(...((((...))))...)..)..))))))..)..))).....(((.(((....))).)))))) ( -31.90, z-score = -0.15, R) >droSim1.chr2L 12188371 78 + 22036055 CUUCCCGCCGAUCGCCCCUCAUCCUGAAAAAUCCUCCCC---------UGGGGGGG---GUGCAACUUUGCUGCAUAAUUGUGGGGCGGA ...........(((((((.((...........((((((.---------...)))))---)((((.......))))....)).))))))). ( -29.90, z-score = -0.71, R) >droSec1.super_16 573725 76 + 1878335 CUUCCCGCCGAUCGCCCCUCAUCCUGAAAAAUCCCCCCC---------UGGGGGG-----UGCAACUUUGCUGCAUAAUUGUGGGGCGGA ...........(((((((.((...........(((((..---------..)))))-----((((.......))))....)).))))))). ( -29.60, z-score = -1.46, R) >droEre2.scaffold_4929 13607559 72 - 26641161 CUUCCC-CCAAUCGCCCCUCAUCCUGAAAAAUGCCC------------AAGGGGG-----UGCAACUUUGCUGCAUAAUUGUGGGGCGGA ......-....(((((((.((...........((((------------....)))-----)(((.......))).....)).))))))). ( -23.00, z-score = -0.12, R) >droMoj3.scaffold_6500 22537892 80 + 32352404 ---UUUCCCAAAAAUUAUAUGCCGCACGAAGCCUGUGCAGAAAGUUUAUGCGCAU-----UUCA--UUCUUCGCAUAAUUGUGAGGAGCA ---....................((..((((..((((((.........)))))))-----))).--.((((((((....)))))))))). ( -20.50, z-score = -1.68, R) >droVir3.scaffold_12963 17495132 79 + 20206255 UUGCCCCCCAAAAAUUAUAUGCCGCGCGAAGCCUGCG----AACUUUAUGCGCAU-----UUCA--UUCUCUGCAUAAUUGUAAGACGGA .......((.........((((.(((..(((......----..)))..)))))))-----....--.(((.((((....))))))).)). ( -13.60, z-score = 0.31, R) >consensus CUUCCCGCCAAUCGCCCCUCAUCCUGAAAAAUCCCCCC__________UGGGGGG_____UGCAACUUUGCUGCAUAAUUGUGGGGCGGA ...........(((((((...............((((.............))))..................(((....)))))))))). (-11.64 = -10.84 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:35:09 2011