| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,372,985 – 12,373,092 |
| Length | 107 |
| Max. P | 0.928909 |
| Location | 12,372,985 – 12,373,092 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 78.69 |
| Shannon entropy | 0.39279 |
| G+C content | 0.31383 |
| Mean single sequence MFE | -19.94 |
| Consensus MFE | -13.23 |
| Energy contribution | -12.77 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.928909 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12372985 107 + 23011544 GUUAAUAUGCAAUGGCAUAAUAUUGUUAUUAUCCAAAUGAAACCCCCUCAAAUUGUCAUAUGAACGGCAAUAAAAAUUGUUCGAGCGAAAGCUGGAUGGAUUAAAAU (((.(((((((((((.((((((....))))))))...(((.......))).)))).))))).))).(((((....)))))((.(((....))).))........... ( -23.10, z-score = -1.72, R) >droAna3.scaffold_12916 3156770 85 - 16180835 ----------------AUUAAGGUAUC-CUAUC---AUAACAUACAC-CAUAAAUGCAUAUAAAAUGCAAUAAAAAUAGUUUGAGCGAAAGCGAGUUGGAUUAUAU- ----------------........(((-(..((---...........-......(((((.....)))))...............((....))))...)))).....- ( -14.30, z-score = -1.46, R) >droEre2.scaffold_4929 13597888 97 - 26641161 --------CCAAUGACAUAAUAUUGCUAUUAUCCAAGUGAUACCCCU-CAAAAAGUCAUAUGAACGGCAAUAAAAAUUGUUCAAGCGAAAGCUGGAUGGAUUAAAA- --------((..........((((((..((...((.(((((......-......))))).))))..))))))......(((((.((....))))))))).......- ( -18.50, z-score = -1.60, R) >droYak2.chr2L 8808459 105 + 22324452 GUUAAUAUUCAAUGACAUAAUGUUGCUAUUAUCCAAAUGAUACACCU-CAAAAUGUCAUAUGAACGGCAAUAAAAAUUGUUCAAGCGAAAGCUGGAUGGAUUAAAA- .(((((.(((((((((((..((.((.((((((....))))))))...-))..))))))).))))............(..((((.((....))))))..))))))..- ( -21.30, z-score = -1.86, R) >droSec1.super_16 564013 105 + 1878335 GUUAAUAUGCAAUGACAUAAUAUUGUUAUUAUCCAAAUGAAACCCCC-CAAAUUGUCAUAUGAACGGCAAUAAAAAUUGUUCGAGCGAAAGCUGGAUGAAUUAAAA- .(((((......(((((......)))))((((((...((((......-...((((((........))))))........))))(((....))))))))))))))..- ( -21.23, z-score = -2.35, R) >droSim1.chr2L 12176351 105 + 22036055 GUUAAUAUGCAAUGACAUAAUAUUGUUAUUAUCCAAAUGAAACCCCC-CAAAUUGUCAUAUGAACGGCAAUAAAAAUUGUUCGAGCGAAAGCUGGAUGAAUUAAAA- .(((((......(((((......)))))((((((...((((......-...((((((........))))))........))))(((....))))))))))))))..- ( -21.23, z-score = -2.35, R) >consensus GUUAAUAUGCAAUGACAUAAUAUUGUUAUUAUCCAAAUGAAACCCCC_CAAAAUGUCAUAUGAACGGCAAUAAAAAUUGUUCGAGCGAAAGCUGGAUGGAUUAAAA_ ............................(((((((.........................(((((((.........))))))).((....)))))))))........ (-13.23 = -12.77 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:35:04 2011