| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,138,858 – 1,138,960 |
| Length | 102 |
| Max. P | 0.734811 |
| Location | 1,138,858 – 1,138,960 |
|---|---|
| Length | 102 |
| Sequences | 12 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 78.38 |
| Shannon entropy | 0.46756 |
| G+C content | 0.60758 |
| Mean single sequence MFE | -39.37 |
| Consensus MFE | -20.67 |
| Energy contribution | -20.68 |
| Covariance contribution | 0.02 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.734811 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1138858 102 + 23011544 GCCCUCCGCCCUGGAGGAGGCGGUGGCCAGCUCCACGAUGCGCAAGCGGGGCAUCAAUUACGAGUACAAUCCGUACUCCGUCGCCUCCAGCG------ACUACGGCAG (((.....(.(((((((.((((((((......))))(((((.(.....).)))))......((((((.....)))))))))).))))))).)------.....))).. ( -45.00, z-score = -2.47, R) >droSim1.chr2L 1109473 102 + 22036055 GCCCUCCGCCCUGGAGGAGGCGGUGGCCAGCUCCACGAUGCGCAAGCGGGGCAUCAACUACGAGUACAACCCGUACUCCGUGGCCUCCAGCG------ACUACGGCAG (((((((.(....).))))((((.((((((((((.....((....))))))).........((((((.....))))))..))))).)).)).------.....))).. ( -45.40, z-score = -1.91, R) >droSec1.super_14 1091707 102 + 2068291 GCCCUCCGCCCUGGAGGAGGAGGUGGCCAGCUCCACGAUGCGCAAGCGGGGCAUCAACUACGAGUACAACCCGUACUCCGUGGCCUCCAGCG------ACUACGGCAG (((.....(.(((((((.((((.(....).))))..(((((.(.....).)))))..((((((((((.....))))).)))))))))))).)------.....))).. ( -43.80, z-score = -1.70, R) >droYak2.chr2L 1117106 102 + 22324452 GCCGUCCGCCCUGGAGGAGGCGGUGGCCAGCUCCACGAUGCGCAAGCGGGGCAUCAACUACGAGUACAACCCGUACUCCGUCGCCUCCAGCG------ACUACGGCAG (((((...(.(((((((.((((((((...(((((.....((....))))))).....))))((((((.....)))))))))).))))))).)------...))))).. ( -49.90, z-score = -3.40, R) >droEre2.scaffold_4929 1183059 102 + 26641161 GCCCUCCGCGCUGGAGGAGGCGGUGGCCAGCUCCACGAUGCGCAAGCGGGGCAUCAACUACGAGUACAACCCGUACUCGGUGGCCUCCAGCG------ACUACGGCAG (((.....(((((((((.(((....)))....(((((((((.(.....).))))).....(((((((.....))))))))))))))))))))------.....))).. ( -53.40, z-score = -3.72, R) >droAna3.scaffold_12916 4609163 108 + 16180835 GCCCACCGCCCUGGAGGAGGCAGUGGCCAGCUCCACGAUGCGCAAGCGGGGCAUCAACUAUGAGUACAACCCGUACCUGCCCGCCAGCACUGUCUCGGACUACGGCAG .......(((.(((..(((((((((.(..((.......(((....)))((((((((....)))((((.....)))).)))))))..))))))))))...))).))).. ( -41.00, z-score = -0.57, R) >dp4.chr4_group3 9588542 99 + 11692001 ACCCACAGCAUUGGAGGAGGCGGUGGCCAGCUCCACGAUGCGCAAGCGGGGCAUCAACUACGAUUAUAAUCCGUAC---AUGGCCCCCAAUG------ACUAUGGCAG ..(((.((((((((((..(((....)))..)))).....((....))(((((......((((.........)))).---...))))).))))------.)).)))... ( -33.90, z-score = -0.95, R) >droPer1.super_8 776137 99 + 3966273 ACCCACCGCAUUGGAGGAGGCGGUGGCCAGCUCCACGAUGCGCAAGCGGGGCAUCAACUACGAUUAUAAUCCGUAC---AUGGCCCCCAAUG------ACUAUGGCAG ...((((((..........))))))((((..((......((....))(((((......((((.........)))).---...)))))....)------)...)))).. ( -33.40, z-score = -0.56, R) >droWil1.scaffold_180772 3572538 96 + 8906247 UCCGACAGCCCUAGAGGAGGCAG---CCAGUUCCACUUUGCAUAAGCGAGGCAUUAACUACGAGUACAAUCCCUAUAUGCCAGCCGCUUCCAAU---GAUUA------ ...............((((((.(---(..........((((....))))(((((.......((......)).....))))).)).))))))...---.....------ ( -21.80, z-score = -0.70, R) >droVir3.scaffold_12963 58340 105 - 20206255 GCCAACGGCUCUGGAGGAGGCUGUGGCCAGCUCCACAAUGCGCAAGCGUGGCAUUAACUAUGAGUAUAAUCCAUAUAUGAGCGUGGCUGGCAAC---GAUUAUGGCAG (((((((((((.....)).))))).((((((..(.(...((....))((((.((((((.....)).))))))))......).)..))))))...---.....)))).. ( -37.60, z-score = -1.12, R) >droMoj3.scaffold_6500 23062696 105 + 32352404 GCCAACCGCCUUAGAGGAGGCCGUGGCCAGCUCCACAAUGCGCAAGCGUGGCAUCAACUACGAAUACAAUCCGUAUAUGAGUGUGAGCAGCAAC---GACUAUGGCAG ((((...(((((....)))))(((.((..(((((((.((((....))))....(((..((((.........))))..)))))).)))).)).))---)....)))).. ( -37.20, z-score = -2.26, R) >droGri2.scaffold_15252 5555026 105 + 17193109 GCCGACGGCUCUGGAGGAAGCGGUGGCCAGCUCCACAAUGCGCAAGCGUGGCAUUAACUAUGAGUAUAAUCCGUAUAUGGCCGUUCCGGUUAAC---GAUUAUAGCAG ((((((((((.((..(((.((.((((......)))).((((....)))).))....((.....))....)))...)).))))))..))))....---........... ( -30.00, z-score = 0.63, R) >consensus GCCCACCGCCCUGGAGGAGGCGGUGGCCAGCUCCACGAUGCGCAAGCGGGGCAUCAACUACGAGUACAAUCCGUACUCGGUCGCCUCCAGCG______ACUACGGCAG .......((..(((((..(((....)))..)))))((..((....))(((((.((......))((((.....))))......)))))...............)))).. (-20.67 = -20.68 + 0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:07:46 2011