| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,361,609 – 12,361,717 |
| Length | 108 |
| Max. P | 0.978589 |
| Location | 12,361,609 – 12,361,717 |
|---|---|
| Length | 108 |
| Sequences | 11 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 71.48 |
| Shannon entropy | 0.61431 |
| G+C content | 0.46136 |
| Mean single sequence MFE | -22.37 |
| Consensus MFE | -11.89 |
| Energy contribution | -11.59 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.00 |
| SVM RNA-class probability | 0.978589 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12361609 108 - 23011544 -CUAGUCCAGCCACCGACUUGCCCCCUUCGGCAGCCUCUUCCACAUUUAUUGUUGCGCCAUUUUGCUGCUCUAUUAUUCAAAAUUGACAGUUGAAUGAGUAAAAUGGCC -..((((........))))((((......))))((..(.............)..))(((((((((((.......(((((((.........)))))))))))))))))). ( -22.93, z-score = -1.07, R) >droSim1.chr2L 12164552 108 - 22036055 -CUGGUCCAGCCACCGACUUGCCCCCUUUGGAAGCCCCAUCCACAUUUAUUGUUGCGCCAUUUUGCUGCUCUAUUAUUCAAAAUUGACAGUUGAAUGAGUAAAAUGGCC -.(((.....))).((((..........((((.......))))........)))).(((((((((((.......(((((((.........)))))))))))))))))). ( -21.78, z-score = -0.26, R) >droSec1.super_16 552479 108 - 1878335 -CUGGUCCAGCCACCGACUUGCCCCCUUUGGAAGCCCCAUCCACAUUUAUUGUUGCGCCAUUUUGCUGCUCUAUUAUUCAAAAUUGACAGUUGAAUGAGUAAAAUGGCC -.(((.....))).((((..........((((.......))))........)))).(((((((((((.......(((((((.........)))))))))))))))))). ( -21.78, z-score = -0.26, R) >droYak2.chr2L 8795110 109 - 22324452 CUUGGUCCAGCCACCGACUGGGCCCCUCGGAAUCCCCUUUCCACUUUUAUUGUUGCGCCAUUUUGCUGCUCUAUUAUUCAAAAUUGACAGUUGAAUGAGCAAAAUGGCC ...(((((((.......)))))))....((((......))))..............(((((((((((.......(((((((.........)))))))))))))))))). ( -33.11, z-score = -3.17, R) >droEre2.scaffold_4929 13586333 106 + 26641161 --UGGUCCAGCCACCGACUUGCCCCC-UCGGAAGCCUCUUCUACUUAUAUUGUUGCGCCAUUUUGCUGCUCUAUUAUUCAAAAUUGACAGUUGAAUGAGUAAAAUGGCC --(((.....)))((((.........-))))..((..(.............)..))(((((((((((.......(((((((.........)))))))))))))))))). ( -21.83, z-score = -0.52, R) >droAna3.scaffold_12916 3145724 93 + 16180835 -------------CUUGUCCAGCUCCACCCCACAACGCCCCCGAC---AUUGUUGCGCCAUUUUGCUGCCCUAUUAUUCAAAAUUGACAGUUGAAUGAGUAAAAUGGCC -------------..((((..((.............))....)))---).......(((((((((((.......(((((((.........)))))))))))))))))). ( -18.03, z-score = -1.37, R) >dp4.chr4_group3 5949072 101 + 11692001 ------CCUACCCCCUUCUUAUAGCCACCCCCUGUGCUACGGACUC--AUUGUUGCGCCAUUUUGCUGCUCUAUUAUUCAAAAUUGACAGCUGAAUGAGUCAAAUGGCC ------.................((((......((((.((((....--.)))).))))(((((.((((.((.(((......))).)))))).))))).......)))). ( -20.90, z-score = -1.66, R) >droPer1.super_1 3053889 101 + 10282868 ------CCUACCCCCUUCUUAUAGCCACCCCCUGUUCUACGGACUC--AUUGUUGCGCCAUUUUGCUGCUCUAUUAUUCAAAAUUGACAGCUGAAUGAGUCAAAUGGCC ------.................((((........((....))...--....(((.(((((((.((((.((.(((......))).)))))).))))).))))).)))). ( -18.70, z-score = -1.28, R) >droVir3.scaffold_12963 17460835 101 - 20206255 ------CUCCCUACCCCGCCGCCCCCUACCCG-GACCCCUUCCAUU-CGCUGUUGCGUCAUUUUGCUGCUCUAUUAUUCAAAAUUGACAGUUGAAUGAGUUAAGUGGCC ------...........(((((.........(-((.....)))...-(((....)))((((((.((((.((.(((......))).)))))).)))))).....))))). ( -23.00, z-score = -2.78, R) >droMoj3.scaffold_6500 22507120 86 - 32352404 -------------------CACAAAUUGCCUUCCACUCUCUCACAU----UGUUGCGUCAUUUUGCUGCUCUAUUAUUCAAAAUUGGCAGUUGAAUGAGUUAAGUGGCC -------------------........................(((----(...((.((((((.((((((..(((......))).)))))).))))))))..))))... ( -17.40, z-score = -0.55, R) >droGri2.scaffold_15252 14894394 90 - 17193109 -------------CUCAUUCACCCACUCACUU-GACUCGCUCAAUU-----GUUACGUCAUUUUGCUGCUCUAUUAUUCAAAAUUGACAGUUGAAUGAGUUAAGUGGCC -------------.............((((((-((((((.((((((-----((((....((((((.............)))))))))))))))).)))))))))))).. ( -26.62, z-score = -4.59, R) >consensus ______CCAGCCACCGACUUGCCCCCUCCCCAAGCCCCAUCCACUU__AUUGUUGCGCCAUUUUGCUGCUCUAUUAUUCAAAAUUGACAGUUGAAUGAGUAAAAUGGCC ........................................................(((((((.(((.......(((((((.........)))))))))).))))))). (-11.89 = -11.59 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:35:03 2011