Locus 1593

Sequence ID dm3.chr2L
Location 12,332,175 – 12,332,265
Length 90
Max. P 0.992693
window2179 window2180

overview

Window 9

Location 12,332,175 – 12,332,265
Length 90
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 73.11
Shannon entropy 0.51347
G+C content 0.55135
Mean single sequence MFE -30.52
Consensus MFE -18.19
Energy contribution -21.43
Covariance contribution 3.24
Combinations/Pair 1.12
Mean z-score -0.97
Structure conservation index 0.60
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.36
SVM RNA-class probability 0.660115
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 12332175 90 + 23011544
GUUUUUGGCCUCCCAGGCAGCCAGCCGAUUCCACAAUGCGCCAUUGU-UGAUGGUUGUGACAUGGGCUGGCUGCACAGCCAUAAUAUCAGA
.....((((.......((((((((((.((..((((....((((((..-.))))))))))..)).))))))))))...)))).......... ( -37.10, z-score =  -2.67, R)
>droSim1.chr2L 12134118 90 + 22036055
GUUUUUGGCCUCCCAGGCAGCCAGCCGAUGCCACAAUGCGCCAUUGU-UGAUGGCUGUGACAGGGGCUGGCUGCACAGCCAUAAUAUCAGA
.....((((.......((((((((((..((.((((....((((((..-.)))))))))).))..))))))))))...)))).......... ( -39.40, z-score =  -2.18, R)
>droSec1.super_16 522882 82 + 1878335
GUUUUUGGCCUCCCAGGCAGCCAGCCGAUGCCACAAUGCGCCAUUGU-UGAUAGCUGUGACAGGGGCUGGCUGCACUGCCAGA--------
...((((((.....((((((((((((..((.((((..((..((....-))...)))))).))..)))))))))).))))))))-------- ( -36.80, z-score =  -1.95, R)
>droEre2.scaffold_4929 13556779 85 - 26641161
GUUUUUGGCCUCCCAGGCAGCCAGCCGAUGCCACAAUGCGCCAUUGU-UGAUGGCUGUGACAG-----GGCUGCACAGCCCUAAUAUCAGA
(((....(((.....)))...((((((...(.((((((...))))))-.).)))))).)))((-----((((....))))))......... ( -27.70, z-score =  -0.03, R)
>droYak2.chr2L 8764262 89 + 22324452
GUUGUUGGCCUCCCAGGCAGCCAGCCGAAGCCACAAUGCGCCAUUGUGUGAUGGCUAUGACAG--GCUGUAUGCACAGCCAUAAUAUCAGA
(((((.(((.((...(((.....))))).))))))))..((((((....)))))).......(--(((((....))))))........... ( -30.00, z-score =  -0.65, R)
>droAna3.scaffold_12916 3116094 77 - 16180835
------GAUCUGAUGACCUGACAG--GACGUCCCGGAGUUCCAUUGC-UGAUUACUGAGUCUU----UCUAUACAGGCCCUUCCGAUGAC-
------.(((.((.(.((((..((--((.(.(.(((((((.......-.)))).))).).).)----)))...)))).)..)).)))...- ( -12.10, z-score =   1.67, R)
>consensus
GUUUUUGGCCUCCCAGGCAGCCAGCCGAUGCCACAAUGCGCCAUUGU_UGAUGGCUGUGACAG__GCUGGCUGCACAGCCAUAAUAUCAGA
......(((.......(((((((((...((.((((....((((((....)))))))))).))...)))))))))...)))........... (-18.19 = -21.43 +   3.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 12,332,175 – 12,332,265
Length 90
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 73.11
Shannon entropy 0.51347
G+C content 0.55135
Mean single sequence MFE -34.28
Consensus MFE -22.68
Energy contribution -24.45
Covariance contribution 1.77
Combinations/Pair 1.33
Mean z-score -2.00
Structure conservation index 0.66
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.56
SVM RNA-class probability 0.992693
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 12332175 90 - 23011544
UCUGAUAUUAUGGCUGUGCAGCCAGCCCAUGUCACAACCAUCA-ACAAUGGCGCAUUGUGGAAUCGGCUGGCUGCCUGGGAGGCCAAAAAC
..........(((((..((((((((((.((..(((((((((..-...))))....)))))..)).))))))))))......)))))..... ( -37.00, z-score =  -2.76, R)
>droSim1.chr2L 12134118 90 - 22036055
UCUGAUAUUAUGGCUGUGCAGCCAGCCCCUGUCACAGCCAUCA-ACAAUGGCGCAUUGUGGCAUCGGCUGGCUGCCUGGGAGGCCAAAAAC
..........(((((..((((((((((..((((((((((((..-...)))))....)))))))..))))))))))......)))))..... ( -43.80, z-score =  -3.67, R)
>droSec1.super_16 522882 82 - 1878335
--------UCUGGCAGUGCAGCCAGCCCCUGUCACAGCUAUCA-ACAAUGGCGCAUUGUGGCAUCGGCUGGCUGCCUGGGAGGCCAAAAAC
--------..((((((.((((((((((..((((((((((((..-...)))))....)))))))..)))))))))))).....))))..... ( -40.20, z-score =  -3.06, R)
>droEre2.scaffold_4929 13556779 85 + 26641161
UCUGAUAUUAGGGCUGUGCAGCC-----CUGUCACAGCCAUCA-ACAAUGGCGCAUUGUGGCAUCGGCUGGCUGCCUGGGAGGCCAAAAAC
.(((((...((((((....))))-----))(((((((((((..-...)))))....))))))))))).(((((.(....).)))))..... ( -33.60, z-score =  -1.34, R)
>droYak2.chr2L 8764262 89 - 22324452
UCUGAUAUUAUGGCUGUGCAUACAGC--CUGUCAUAGCCAUCACACAAUGGCGCAUUGUGGCUUCGGCUGGCUGCCUGGGAGGCCAACAAC
..(((((....((((((....)))))--))))))..(((((......)))))...(((((((((((((.....)))...)))))).)))). ( -32.80, z-score =  -1.25, R)
>droAna3.scaffold_12916 3116094 77 + 16180835
-GUCAUCGGAAGGGCCUGUAUAGA----AAGACUCAGUAAUCA-GCAAUGGAACUCCGGGACGUC--CUGUCAGGUCAUCAGAUC------
-(((..(....)((((((.((((.----..(((((.((.....-))..(((....))).)).)))--))))))))))....))).------ ( -18.30, z-score =   0.10, R)
>consensus
UCUGAUAUUAUGGCUGUGCAGCCAGC__CUGUCACAGCCAUCA_ACAAUGGCGCAUUGUGGCAUCGGCUGGCUGCCUGGGAGGCCAAAAAC
...........((((..(((((((((....(((((((((((......)))))....))))))....)))))))))......))))...... (-22.68 = -24.45 +   1.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:34:57 2011