| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,320,530 – 12,320,630 |
| Length | 100 |
| Max. P | 0.881066 |
| Location | 12,320,530 – 12,320,630 |
|---|---|
| Length | 100 |
| Sequences | 11 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 65.08 |
| Shannon entropy | 0.69024 |
| G+C content | 0.49420 |
| Mean single sequence MFE | -18.74 |
| Consensus MFE | -8.50 |
| Energy contribution | -8.50 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.881066 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12320530 100 + 23011544 ----AAAAACUCACGUGUCAUGAUGCACUUGAGACUUUGGCGCAUUUG-UCUGUCCCAGUGCCUUUCCCCUUUGUACCAAGCUCCUUCCGUUGACUCCUCCUCCU ----.....((((.((((......)))).)))).....(((((.....-.........))))).......................................... ( -14.94, z-score = 0.10, R) >droSim1.chr2L 12121540 83 + 22036055 ----AAAAACUCACGUGUCAUGAUGCACUUGAGACUUUGGCGCAUUUG-UCUGUCCCAGUGCCUUUCCCCUUUGU--------CCUUCCGUAUACU--------- ----.....((((.((((......)))).)))).....(((((.....-.........)))))............--------.............--------- ( -14.94, z-score = -0.99, R) >droSec1.super_16 510227 83 + 1878335 ----AAAAACUCACGUGUCAUGAUGCACUUGAGACUUUGGCGCAUUUG-UCUGUCCCAGUGCCUUUCCCCUUUGU--------CCUUCCGUAUACU--------- ----.....((((.((((......)))).)))).....(((((.....-.........)))))............--------.............--------- ( -14.94, z-score = -0.99, R) >droYak2.chr2L 8751804 89 + 22324452 ----AAAAACUCACGUGUCAUGAUGCACUUGAGACUGUGGCGCAUUUG-UCUGUCCCAGUGCCCUUCCUUCCCCUUUGUCACC-AAUCUGCUUUC---------- ----.....((((.((((......)))).))))((((.((.(((....-..))))))))).......................-...........---------- ( -15.50, z-score = -0.29, R) >droEre2.scaffold_4929 13543159 85 - 26641161 ----AAAAACUCACGUGUCAUGAUGCACUUGAGACUUUGGCGCAUUUG-UCUGUCCCAAAGUCUUUCCCCAUCCCCAGUCACCCAAUCUG--------------- ----..........(((.(..((((.....((((((((((.(((....-..))).))))))))))....))))....).)))........--------------- ( -21.50, z-score = -3.64, R) >droAna3.scaffold_12916 3104213 84 - 16180835 ----AAAAACUCACGUGUCAUGAUGCACUUGAGACUGUGGCGCAUUUG-UCUCUCCCCUUGUCCUUGCCGUACAUUU---CCCCAGGCGACU------------- ----.....((((.((((......)))).))))...(.((((....))-)).)...........(((((........---.....)))))..------------- ( -14.92, z-score = 0.61, R) >dp4.chr4_group3 5905663 82 - 11692001 ----AAAAACUCACGUGUCAUGAUGCACUUGAGACUUUGGCGCAUUUG-UCUGUCGCCAGGGUCCUGUCGUUUGU-----CCUCUGGCUGCU------------- ----.....((((.((((......)))).)))).....((((....))-)).((.(((((((..(........).-----.))))))).)).------------- ( -24.20, z-score = -1.25, R) >droPer1.super_1 3007830 87 - 10282868 ----AAAAACUCACGUGUCAUGAUGCACUUGAGACUUUGGCGCAUUUG-UCUGUCGCCAGGGUCCUGUCGUUUGU-----CCUCUGGCUGCUGUCUC-------- ----..(((((((.((((......)))).)))((((((((((((....-..)).)))))))))).....))))..-----.....(((....)))..-------- ( -24.80, z-score = -1.23, R) >droWil1.scaffold_180708 10022446 90 + 12563649 AAAGAAAAACUCACGUGUCAUGAUGCACUUGAGACUAACGUGUGGGAUUUCCUUACUUCCUUCCUUCUUCCUCCUGAU-CAUCAUUUUUGU-------------- .(((((...((((.((((......)))).))))......(((.(((....))))))........))))).........-............-------------- ( -13.80, z-score = 0.18, R) >droVir3.scaffold_12963 17412028 88 + 20206255 AAAAAAAAACUCACGUGUCAUGCUGCACUUGAGACUG-GGCGCAGUCA-ACUGCUGCUCAGUCUCUCACUCUUUUGCU--CCCUCUCUUGCC------------- ..............((((......))))..(((((((-(((((((...-.)))).)))))))))).............--............------------- ( -26.90, z-score = -3.69, R) >droGri2.scaffold_15252 14843184 83 + 17193109 ----CAAAACUCACGUGUCAUGAUGCACUUGAGACUG-GGCGCAGUCCCAAUGCCACCCA--CUGCCACCCACUCUCG--CCCACUUUCGCU------------- ----.....((((.((((......)))).))))..((-((((.((.......((......--..))........))))--))))........------------- ( -19.66, z-score = -1.38, R) >consensus ____AAAAACUCACGUGUCAUGAUGCACUUGAGACUUUGGCGCAUUUG_UCUGUCCCAGUGCCUUUCCCCUUUGU_____CCCCCUUCUGCU_____________ .........((((.((((......)))).))))........................................................................ ( -8.50 = -8.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:34:56 2011