| Sequence ID | dm3.chrYHet |
|---|---|
| Location | 24,321 – 24,439 |
| Length | 118 |
| Max. P | 0.854331 |
| Location | 24,321 – 24,439 |
|---|---|
| Length | 118 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 81.78 |
| Shannon entropy | 0.29900 |
| G+C content | 0.51804 |
| Mean single sequence MFE | -38.83 |
| Consensus MFE | -26.27 |
| Energy contribution | -28.15 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.854331 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrYHet 24321 118 + 347038 AAAGAAGGAUAACAUUCCCGCCAUAGCAAUUGUGCUCGGGAUUAAGCUGGAAGGUUUGGUCGAGGACAUGCGGAAGACAUAGUCCGAGUUCAUCGACCAGACCACAGAUGACCCGGAA ......(((......)))..((..((((....)))).(((.(((..(((...(((((((((((((((((((....).))).))))(....).))))))))))).))).)))))))).. ( -43.20, z-score = -3.83, R) >droSim1.chrU 8095146 117 - 15797150 AAAGAAGGAUGACCUCCCCGUCAUAGCAAGUACACUUUGGAUCAAGUAGGAGGGUUUGGUCGAGGAAAUGCCAAAGACGCUUUCCGAGUUCAUCGACCAGACCACAC-CGAGCCCGAA ......(((((((......))))).((......((((......)))).((.(((((((((((((((((.((.......)))))))(....).))))))))))).).)-)..))))... ( -35.10, z-score = -1.63, R) >droSec1.super_69 15220 118 + 174750 AAAGAAGGAUGAUUUUCCCGCCAUAGCGAGAGCACUCGGGAUAAAGCUGGAAGGUUUGGUCGAGGAAAUGCGGAAGACAUUGUCCGAAUUCAUCGACCAGACCGCAGACGAGCCAGAA ......((.......(((((.....((....))...)))))....((((...(((((((((((.(((...((((........))))..))).))))))))))).))).)...)).... ( -41.70, z-score = -3.37, R) >droEre2.scaffold_4929 3848603 118 - 26641161 GAAGAAGGAUGAUUUUCCCGCCAUAGCGAGCGCUCUAGGGAUCAAGCUGGAGGGCUUGGUCGAGGAAAUGUGGAAGACGCUGUCCGAGUUCAUCGAUCAGACGGUAGACGAGCCCGAA ......((((...((((((((((.....(((.((((((........)))))).)))))).)).))))).(((.....))).))))(.((((.((.(((....))).)).)))).)... ( -35.30, z-score = 0.64, R) >consensus AAAGAAGGAUGACUUUCCCGCCAUAGCAAGUGCACUCGGGAUCAAGCUGGAAGGUUUGGUCGAGGAAAUGCGGAAGACACUGUCCGAGUUCAUCGACCAGACCACAGACGAGCCCGAA ......((.......(((((.....((....))...))))).....(((...(((((((((((.(((...((((........))))..))).))))))))))).))).....)).... (-26.27 = -28.15 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:08:03 2011