| Sequence ID | dm3.chrX |
|---|---|
| Location | 22,415,269 – 22,415,332 |
| Length | 63 |
| Max. P | 0.891455 |
| Location | 22,415,269 – 22,415,332 |
|---|---|
| Length | 63 |
| Sequences | 5 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 63.44 |
| Shannon entropy | 0.62751 |
| G+C content | 0.38999 |
| Mean single sequence MFE | -12.90 |
| Consensus MFE | -5.15 |
| Energy contribution | -6.07 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.891455 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 22415269 63 - 22422827 GCAAAAUAUCGAUUCAUCGACACCAUACUGCAUACAUUCGAUGGUUUUAUUGAUAUCGAUGUU ....((((((((((((..((.(((((..((....))....))))).))..))).))))))))) ( -15.00, z-score = -2.42, R) >droSim1.chrU 4333684 54 - 15797150 GCAAAACAUCGAUUUAUCGAC---------CAUACAUUCGAUGGUUUUGUUGAUAUCGAUGUC .....(((((((..(((((((---------...((........))...)))))))))))))). ( -14.40, z-score = -2.10, R) >droSec1.super_39 336219 54 - 341166 GCAAAACAUCGAUUUAUCGAC---------CAUACAUUCGAUGGUUUUGUUGAUAUCGAUGUC .....(((((((..(((((((---------...((........))...)))))))))))))). ( -14.40, z-score = -2.10, R) >droYak2.chrX 21737529 55 - 21770863 GCAAAACAUCGAUUAGUCUCGA-------GCAUACUUUCGAUAG-CUUGUCCAUAUCGAUGAU ......(((((((......(((-------((............)-)))).....))))))).. ( -13.70, z-score = -2.23, R) >droAna3.scaffold_12929 2262722 50 + 3277472 GAGCAACAGCGAUAGGUCGGUG------GUCAGGAAAUCGAU---UAAAUACGUGUUUG---- (((((.((.(((....))).))------(((........)))---........))))).---- ( -7.00, z-score = 0.42, R) >consensus GCAAAACAUCGAUUUAUCGAC_________CAUACAUUCGAUGGUUUUGUUGAUAUCGAUGUC ......((((((((((((((.................)))))))..........))))))).. ( -5.15 = -6.07 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:08:02 2011