| Sequence ID | dm3.chrX |
|---|---|
| Location | 22,381,649 – 22,381,723 |
| Length | 74 |
| Max. P | 0.559666 |
| Location | 22,381,649 – 22,381,723 |
|---|---|
| Length | 74 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 48.30 |
| Shannon entropy | 0.73514 |
| G+C content | 0.45689 |
| Mean single sequence MFE | -18.85 |
| Consensus MFE | -6.53 |
| Energy contribution | -6.78 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.559666 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 22381649 74 - 22422827 -----------GGGCCAUCGGACAUAAUCCGGGCCAUUUAAGGGUAAUCCCG------GAGCGAACCGGAAUAAUUCAAACGGCCAGAUCG------ -----------.((((....((..((.(((((..(.(((..(((....))).------))).)..))))).))..))....))))......------ ( -22.40, z-score = -0.81, R) >droEre2.scaffold_4784 1590659 59 + 25762168 -----------GGGUAAUUGGACAUAAUCCAGGCCGUUUAAGAGUAAUCCCG------GAGCGUACCGGGAUUAUU--------------------- -----------.(((...((((.....)))).))).......((((((((((------(......)))))))))))--------------------- ( -22.40, z-score = -3.26, R) >droYak2.chr2h_random 1936657 62 + 3774259 -----------GGGUCAUUGGACAUAAUCCAGGCCAUUUAAGAGUAAUCCCG------GACCGAACCGGAGAAAAUUAA------------------ -----------.((((..((((.....))))))))............(((((------(......)))).)).......------------------ ( -15.20, z-score = -0.99, R) >droWil1.scaffold_180764 1044616 97 - 3949147 GAGGCAUCAAAAGGCAGACAUAUCUCAUUAAUGCCAUUUCAAUGUGGUAUAGACUGAUGUUUAUUCUUGAAUGAUUAGAACGAUAAAACGCGCAACA ...((((((.((((.((((((.(((.....(((((((......))))))))))...))))))..))))...)))).....((......)).)).... ( -15.40, z-score = 0.65, R) >consensus ___________GGGCAAUCGGACAUAAUCCAGGCCAUUUAAGAGUAAUCCCG______GAGCGAACCGGAAUAAUU_AA__________________ ............((((..((((.....)))))))).............................................................. ( -6.53 = -6.78 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:08:01 2011