| Sequence ID | dm3.chrX |
|---|---|
| Location | 22,347,361 – 22,347,478 |
| Length | 117 |
| Max. P | 0.664859 |
| Location | 22,347,361 – 22,347,478 |
|---|---|
| Length | 117 |
| Sequences | 8 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 74.37 |
| Shannon entropy | 0.51589 |
| G+C content | 0.60869 |
| Mean single sequence MFE | -42.44 |
| Consensus MFE | -20.31 |
| Energy contribution | -20.11 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.664859 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 22347361 117 - 22422827 UUGGCAUCCCGAACCCAAUGACAGGCACUGAUCGCCGAGCAGGCGAAGAUGGCGCCCAGAACAAAGCGCCAGCGGAGUGAACUCCGUUUCUCAGUGUUUACCACCUCAGCCAGCCGA (((((.....(....)..((..((((((((((((((.....)))))...((((((..........))))))((((((....))))))...)))))))))..)).....))))).... ( -43.70, z-score = -3.08, R) >droSim1.chr3L_random 449383 117 + 1049610 UUGGCAUCCCGAACCCAAUGACAGGCACUGAUCGCCGAGCAGGCGAAGAUGGCGCCCAGGACAAAGCGCCAGCGAAAUGAACUCCGUUUCUCGGUGUUUACCACCUCAGCCAGCCGA ((((....))))...........(((.....(((((.....)))))...((((....(((...(((((((.(.((((((.....)))))).))))))))....)))..))))))).. ( -37.50, z-score = -0.98, R) >droSec1.super_39 278330 117 - 341166 UUGGCAUCCCGAACCCAAUGACAGGCACUGAUCGCCGAGCAGGCGAAGAUGGCGCCCAGGACAAAGCGCCAGCGAAAUGAACUCCGUUUCUCGGUGUUUACCACCUCAGCCAGCCGA ((((....))))...........(((.....(((((.....)))))...((((....(((...(((((((.(.((((((.....)))))).))))))))....)))..))))))).. ( -37.50, z-score = -0.98, R) >droYak2.chrX 21692302 117 - 21770863 UUGGCAUACCGAACCCAAUGGCAGGCGCUGAUCGCCGAACAGGCGAAGAUGGCACCCAGCACAAGGCGCCAGCGGAAUGAGCUCCGUUUCUCGGUGUUUACCACCUCAGCCAGCCGA (((((.....(....)..((((.((((((..(((((.....)))))...((((.....)).)).))))))((((((......))))))....((((.....))))...))))))))) ( -43.70, z-score = -1.52, R) >droEre2.scaffold_4690 18616077 117 - 18748788 UUGGCAUCCCGAACCCAGUGACAGGCACUGAUCGCCGAGCAGGCGAAGAUGGCGCCCAUAACAAGGCGCCAUCUGAACGAGCUCCGUUUCUCUGUGUUUACCACCUCAGCCAGCCGA (((((.....(....).(((..((((((.(((((((.....)))))((((((((((........))))))))))(((((.....))))).)).))))))..)))....))))).... ( -43.80, z-score = -2.83, R) >dp4.chr2 11208008 114 - 30794189 UGGGGAUCCCUCAGCCAGUACCAGGCCCCGAUGGCCGUGCAUAUCGACAUGGCGGACAGGAGAAUGCGCCAUCGGAACG---UCGGUCUGUGCGAGAGAACCACUUCGGUGAGUCGC (((((...)))))(((((.(((.(((.((((((((...((((.((..(.((.....)))..))))))))))))))...)---)))))))).))....((..(((....)))..)).. ( -43.60, z-score = -0.47, R) >droPer1.super_0 2560091 114 + 11822988 UGGGGAUCCCUCAGCCAGUACCAGGCCCCGAUGGCCGUGCAUAUCGACAUGGCGGACAGGAGAAUGCGCCAUCGGAAGG---UCGGUCUGUGCGAGAGAACCACUUCGGUGAGUCGC (((((...)))))(((((.(((.((((((((((((...((((.((..(.((.....)))..))))))))))))))..))---)))))))).))....((..(((....)))..)).. ( -46.80, z-score = -1.29, R) >droAna3.scaffold_12929 2228486 117 + 3277472 CGGGCCUCCUCCAGCCAGUGGCACGAUCCCACUGCCGUGCAGGUAACAAUGGCGCCCAUAAGUAGGCCUCCCCGGCAUUUGCUCGGCUUCUCGGAGGCCACCAUCUCGCCCAGACGC .((((........((((((((.......))))((((.....))))....))))...........((((((((((((....)).)))......)))))))........))))...... ( -42.90, z-score = -0.48, R) >consensus UUGGCAUCCCGAACCCAAUGACAGGCACUGAUCGCCGAGCAGGCGAAGAUGGCGCCCAGGACAAAGCGCCAGCGGAAUGAACUCCGUUUCUCGGUGUUUACCACCUCAGCCAGCCGA .(((....)))............(((.(((((((((.....)))))...(((((((........)))))))..................................))))...))).. (-20.31 = -20.11 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:08:00 2011