| Sequence ID | dm3.chrX |
|---|---|
| Location | 22,338,909 – 22,339,022 |
| Length | 113 |
| Max. P | 0.956313 |
| Location | 22,338,909 – 22,339,022 |
|---|---|
| Length | 113 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.83 |
| Shannon entropy | 0.41167 |
| G+C content | 0.41127 |
| Mean single sequence MFE | -26.36 |
| Consensus MFE | -19.42 |
| Energy contribution | -19.04 |
| Covariance contribution | -0.37 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.956313 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 22338909 113 - 22422827 CACGACUGCUCGUAAUUGGAGCGUGGAAUAUCACUCUUCAUGUUAUGACAUUUUUUCGCGAGCAGUGAAAUAAUUGUACACCGCGAAAAAUUGUUCUCUUGCAGCAUAGUUUA------- ...(.((((((((((((((((.(((......))).))))).)))))))((.(((((((((.(((((......)))))....))))))))).)).......)))))........------- ( -33.40, z-score = -2.74, R) >droEre2.scaffold_4690 138416 93 + 18748788 CACGACUGCUCGUAAUUGGAGCGUGGAAUAUCACUCUUCAUGUUAUGACAUUUUUUCGCCAGCAGCGAAUUAAUUGUACACCGCGAGAAAUGG--------------------------- .........((((((((((((.(((......))).))))).)))))))(((((((.(((.....((((.....)))).....)))))))))).--------------------------- ( -22.60, z-score = -0.91, R) >droYak2.chrX 83262 113 + 21770863 CACGACUGCUCGUAAUUGGAGCGUGGAAUAUCACUCUUCAUGUUAUGACAUUUUUUCGCGAGCAGCGAAUUAAUUGUACACCGCGAGAAAAGGCAGCCCUGCUGCACACUUUA------- ......((.((((((((((((.(((......))).))))).)))))))))((((((((((....((((.....))))....)))))))))).(((((...)))))........------- ( -33.10, z-score = -2.00, R) >droSec1.super_39 272071 113 - 341166 CACGACUGCUCGUAAUUGGAGCGUGGAAUAUCACUCUUCAUGUUAUGACAUUUUUUCGCGAGCAGCGAAUUAAUUGUACACCGCGAGAAAUUGUAUCCUUGCAGCAAACCUUA------- ...(.((((.(((((((((((.(((......))).))))).))))))(((.(((((((((....((((.....))))....))))))))).)))......)))))........------- ( -32.20, z-score = -2.46, R) >droSim1.chr3L_random 604017 113 - 1049610 CACGACUGCUCGUAAUUGGAGCGUGGAAUAUUACUCUUCAUGUUAUGACAUUUUUUCGCGAGCAGCGAAUUAAUUGUACACCGCGAGAAAUUGUAUCCUUGCAGCAUACCUUA------- ...(.((((.(((((((((((.((((....)))).))))).))))))(((.(((((((((....((((.....))))....))))))))).)))......)))))........------- ( -30.00, z-score = -1.95, R) >droWil1.scaffold_180702 1958242 113 - 4511350 CACGGCUGCUCGUAAUUGGAGCGUGGAAUAUCACUCUUCAUGUUAUGACAUUUUUUCGCCAACAGCGAAUUAAUUGUACACUGAGCCAAAUUUGCAACUUUUAAUAUUGUUUA------- ...((((..((((((((((((.(((......))).))))).))))))).(((..(((((.....)))))..))).........))))..........................------- ( -25.20, z-score = -1.31, R) >droVir3.scaffold_12970 7316360 120 + 11907090 CACGGCUGCUCGUAAUUGGAGCGUGGAAUAUCACUCUUCAUGUUAUGACAUUUUUUCGCCAACAGCGAAUUAAUUGUGCACAGCAAUAAAUUUCGAGUCAGCUCAAAUAAUAAUAAUCUA ...(((((((((.((((((((.(((......))).)))).((((.(((((((..(((((.....)))))..)).))).)).))))...)))).)))).)))))................. ( -31.50, z-score = -2.86, R) >droGri2.scaffold_15203 10698158 90 - 11997470 CACGGCUGCUCGUAAUUGGAGCGUGGAAUAUCACUCUUCAUGUUAUGACAUUAUUUCGCCAACAGCGAAUAAAUUGUGCACCGCAAGAAA------------------------------ ..(((.(((.(((((((((((.(((......))).))))).))))))(((....(((((.....))))).....))))))))).......------------------------------ ( -25.10, z-score = -1.90, R) >droMoj3.scaffold_6473 9349149 92 + 16943266 CACGGCUGCUCGUAAUUGGAGCGUGGAAUAUCACUCUUCAUGUUAUGACAUUUUUUCGCCAACAGCGAAUUAAUUGUGCACAGCAAGAAAUU---------------------------- ....((((.((((((((((((.(((......))).))))).))))))).(((..(((((.....)))))..)))......))))........---------------------------- ( -24.00, z-score = -1.59, R) >droAna3.scaffold_12929 1052773 89 - 3277472 CACGACUGCUCGUAAUUGGAGCGUGCAAUAUCACUCUUCAUGUUAUGACAUAUUUUCGCCAACAGCGAAUUAAUUGUACACUGAGAAAA------------------------------- .((((.((.((((((((((((.(((......))).))))).)))))))))....(((((.....)))))....))))............------------------------------- ( -18.60, z-score = -0.85, R) >dp4.chrXL_group1a 8214423 89 - 9151740 CACGACUGCUCGUAAUUGGAGCGUGGAAUAUCACUCUUCAUGUUAUGACAUUUUUUCGCCAACAGCGAAUUAAUUGUACACUGAGAGAA------------------------------- ((((.((.(........).))))))........(((((..(((....(((((..(((((.....)))))..)).))))))..)))))..------------------------------- ( -20.30, z-score = -1.10, R) >droPer1.super_15 573929 89 - 2181545 CACGACUGCUCGUAAUUGGAGCGUGGAAUAUCACUCUUCAUGUUAUGACAUUUUUUCGCCAACAGCGAAUUAAUUGUACACUGAGAGAA------------------------------- ((((.((.(........).))))))........(((((..(((....(((((..(((((.....)))))..)).))))))..)))))..------------------------------- ( -20.30, z-score = -1.10, R) >consensus CACGACUGCUCGUAAUUGGAGCGUGGAAUAUCACUCUUCAUGUUAUGACAUUUUUUCGCCAACAGCGAAUUAAUUGUACACCGCGAGAAAUU____________________________ .((((.((.((((((((((((.(((......))).))))).)))))))))....(((((.....)))))....))))........................................... (-19.42 = -19.04 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:59 2011