| Sequence ID | dm3.chrX |
|---|---|
| Location | 22,296,093 – 22,296,155 |
| Length | 62 |
| Max. P | 0.857229 |
| Location | 22,296,093 – 22,296,155 |
|---|---|
| Length | 62 |
| Sequences | 3 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 54.30 |
| Shannon entropy | 0.65291 |
| G+C content | 0.32887 |
| Mean single sequence MFE | -7.53 |
| Consensus MFE | -6.81 |
| Energy contribution | -5.27 |
| Covariance contribution | -1.54 |
| Combinations/Pair | 2.00 |
| Mean z-score | -0.15 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.857229 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 22296093 62 - 22422827 UUGCAAAAUAAUUGAAAACAAAAAAGUUUUCCAUACUUACCCUUAAUUUCAAACUGAUCGUU .............((((((......))))))............................... ( -4.20, z-score = -0.58, R) >droWil1.scaffold_181134 826914 59 - 1305803 --GCAAUCGCGUCAAAAGUGACGAAGUUAUUGACAAAAGUCACUGUUUUCGAA-AGAUCGUU --((.(((.((.....((((((...(((...)))....)))))).....))..-.))).)). ( -11.70, z-score = -0.44, R) >droVir3.scaffold_13036 951098 62 - 1135500 UAAAGAUAUCUUGGGAAACAAAAAAGUUUUUCGAACAAGAACCUACUUUUAGACCGACCGUU ..........(((..((((......))))..)))............................ ( -6.70, z-score = 0.55, R) >consensus U_GCAAUAUCAUCGAAAACAAAAAAGUUUUUCAAACAAGACCCUAAUUUCAAACAGAUCGUU ..........(((((((((......)))))))))............................ ( -6.81 = -5.27 + -1.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:56 2011