| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,306,736 – 12,306,791 |
| Length | 55 |
| Max. P | 0.654504 |
| Location | 12,306,736 – 12,306,791 |
|---|---|
| Length | 55 |
| Sequences | 7 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 92.19 |
| Shannon entropy | 0.14568 |
| G+C content | 0.47153 |
| Mean single sequence MFE | -12.07 |
| Consensus MFE | -10.80 |
| Energy contribution | -11.09 |
| Covariance contribution | 0.29 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.654504 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12306736 55 + 23011544 AACAAAUUGCUGCUGCUAGCCGAAAUGCGAAAUGUGAGCUGCCAUGUUUCGCCUC ........((((....))))......((((((((((......))))))))))... ( -13.40, z-score = -1.49, R) >droSim1.chr2L 12107042 55 + 22036055 AACAAAUUGCUCCUGCUAGCCGAAAUGCGAAAUGUGAGCUGCCAUGUUUCGCCUC ........((....))..........((((((((((......))))))))))... ( -12.50, z-score = -1.71, R) >droSec1.super_16 496286 55 + 1878335 AACAAAUUGCUCCUGCUAGCCGAAAUGCGAAAUGUGAGCUGCCAUGUUUCGCCUC ........((....))..........((((((((((......))))))))))... ( -12.50, z-score = -1.71, R) >droYak2.chr2L 8737186 55 + 22324452 AACAAAUUGCUCCUGCUAGCCGAAAUGCGAAAUGUGAGCUGCCAUGUUUCGCGUC ........((....))........((((((((((((......)))))))))))). ( -14.40, z-score = -1.85, R) >droAna3.scaffold_12916 3090459 55 - 16180835 AACAAAUUGCUCCUGCUAGCCGAAAUGCGAAAUGUGAGCUGCCAUGUUUCGCCUC ........((....))..........((((((((((......))))))))))... ( -12.50, z-score = -1.71, R) >dp4.chr4_group3 5884850 52 - 11692001 AACAAAUUGCUCAUGCUA--UGCUAUGCGAAAUGUGAGCUGCCAUGUUUC-CUUC ((((....((((((..(.--(((...))).)..)))))).....))))..-.... ( -9.60, z-score = -0.70, R) >droPer1.super_1 2987121 52 - 10282868 AACAAAUUGCUCAUGCUA--UGCUAUGCGAAAUGUGAGCUGCCAUGUUUC-CUUC ((((....((((((..(.--(((...))).)..)))))).....))))..-.... ( -9.60, z-score = -0.70, R) >consensus AACAAAUUGCUCCUGCUAGCCGAAAUGCGAAAUGUGAGCUGCCAUGUUUCGCCUC ........((....))..........((((((((((......))))))))))... (-10.80 = -11.09 + 0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:34:53 2011