| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,118,887 – 1,118,957 |
| Length | 70 |
| Max. P | 0.688801 |
| Location | 1,118,887 – 1,118,957 |
|---|---|
| Length | 70 |
| Sequences | 6 |
| Columns | 70 |
| Reading direction | reverse |
| Mean pairwise identity | 77.41 |
| Shannon entropy | 0.43710 |
| G+C content | 0.45596 |
| Mean single sequence MFE | -15.36 |
| Consensus MFE | -8.67 |
| Energy contribution | -10.59 |
| Covariance contribution | 1.92 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.688801 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 1118887 70 - 23011544 CGCAUCGAAUUGAAUUGAAUCUGGGGAAAAUCAGUCCGAGUCCCAGCUACACAGUUCAGUUUCGCUUCCC .((...(((((((((((...((((((....((.....)).)))))).....))))))))))).))..... ( -20.00, z-score = -2.29, R) >droSim1.chr2L 1089055 69 - 22036055 CGCAUCGAAUCGAAUUGAAUCUGGGG-AAAUCAGUCCGAGUCCCAGCUACACAGUUCAGUUUCGCUUCCC ......(((.((((((((((((((((-...((.....)).)))))).......)))))).)))).))).. ( -17.61, z-score = -1.29, R) >droSec1.super_14 1072203 69 - 2068291 CGCAUCGAAUCGAAUUGAAUCUGGGG-AAAUCAGUCCGAGUCCCAGCUACACAGUUCAGUUUCGCUUCCC ......(((.((((((((((((((((-...((.....)).)))))).......)))))).)))).))).. ( -17.61, z-score = -1.29, R) >droYak2.chr2L 1096402 70 - 22324452 CGUAUCGAAUCGAAUUGAAUCUGGGGAAAAUCAGUCCGAGUCCCAGCUACACAGUUCAGUUUCGCUUCCC ......(((.((((((((((((((((....((.....)).)))))).......)))))).)))).))).. ( -17.01, z-score = -1.32, R) >droEre2.scaffold_4929 1163169 70 - 26641161 UGCAUCGAAUCGAAUUGAAUCUGGGGAAAAUCAGUCCGAGUCCCAGCUACACAGUUCAGUUUCGCUUCCC ......(((.((((((((((((((((....((.....)).)))))).......)))))).)))).))).. ( -17.01, z-score = -1.15, R) >droMoj3.scaffold_6500 23036793 53 - 32352404 UACAGCAAGUUCAA--AAAUCAAAGAGGAAUAAAAACAUAUUUCAUAUACAAAGC--------------- ..............--..........((((((......))))))...........--------------- ( -2.90, z-score = -1.92, R) >consensus CGCAUCGAAUCGAAUUGAAUCUGGGGAAAAUCAGUCCGAGUCCCAGCUACACAGUUCAGUUUCGCUUCCC ......(((.((((((((((((((((....((.....)).)))))).......)))))).)))).))).. ( -8.67 = -10.59 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:07:45 2011