| Sequence ID | dm3.chrX |
|---|---|
| Location | 22,274,045 – 22,274,188 |
| Length | 143 |
| Max. P | 0.994367 |
| Location | 22,274,045 – 22,274,188 |
|---|---|
| Length | 143 |
| Sequences | 5 |
| Columns | 154 |
| Reading direction | forward |
| Mean pairwise identity | 62.65 |
| Shannon entropy | 0.67289 |
| G+C content | 0.45505 |
| Mean single sequence MFE | -44.36 |
| Consensus MFE | -22.21 |
| Energy contribution | -23.14 |
| Covariance contribution | 0.93 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.69 |
| SVM RNA-class probability | 0.994367 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 22274045 143 + 22422827 UUUAGAGAUCAUAGAUAUGUAGGGUCGAUAGUCGAUGUCGAUAGUUAUCGAUGCCUAUGUUGCAAGCUGUGUGGCAC---------UCCGCCCUGAGAAAAGCCUGAGCUAGGGGCACUGCCACUAAAAAAAA--GAAGGCAGUUCGUAACAUA ..................((((((((((((((((....))))...))))))).)))))(((((.((((((((((((.---------...(((((......(((....))).)))))..)))))).........--....)))))).)))))... ( -44.41, z-score = -2.03, R) >droSim1.chrX 17019148 148 + 17042790 AUUAGAGAUCGCAAGUAUGUAGAGUCGUGAG---ACGUCGAUAGUUAUCGAUGCUUAUGGUGCGAUCUGUGGGGCACGAGGGAAACUCUGCCCUGAGAAAAGCCUGAGCUAGCGGCAGUGCCACCAAGAAAA---GAAAGCAGUUCGUAACAUG .....((((((((.(((.((...(((....)---))((((((....)))))))).)))..)))))))).(((((((((((.....)))((((((......(((....))))).))))))))).))).(((..---(....)..)))........ ( -48.60, z-score = -2.07, R) >droSec1.super_39 232100 148 + 341166 AUUAGAGAUCGUACGUAUGUAGAGUCGUGAG---ACGUCGAUAGUUAUCGAUGCUUAUGGUGCGAGCUGUGGGGCACGAGGGAAACUCUGCCCUGAGAAAAGCCUGAGCUAGCGGCACUGCCACUAAGAAAA---GAAAGCAGUUCGUAACAUG ...............(((((....(((((((---.(((((((....))))))))))))))((((((((((((((((.(((.....))))))))).........((...((((.(((...))).)).))...)---)...))))))))))))))) ( -51.40, z-score = -2.66, R) >droYak2.chr2L 81279 150 - 22324452 AUUAGGGAUCGUAGAUGUGUAGAGUUGUGAG---ACGUCGAUAGUUAUCGAUACGGAUGUUGCGAGCUGUGUGGUAAGGGGAAAACUCCGCCCUGGGAAAA-CCUGAGCUGGCGGCAUUGUCCCAAAUAAGAGAUUCAAGCAGUUCGUAACAUA ........((((((((((.(.........).---)))))(((....)))..)))))((((((((((((((.(((....((((.....(((((((.((....-.)).))..))))).....))))...........))).)))))))))))))). ( -47.36, z-score = -1.93, R) >droWil1.scaffold_180949 5466985 133 - 6375548 -----------CGUGUUUAUGCAAUUGCACGCC-UCGACCACAGUCGUCGUCAUCAGCUUUAU-AUUUCAACGAUUUGGUUGA----CAGUUUUACUAAAUGUAUGUA-UGUGUGCACACAAACAAAAAAAAAUAUAUAGUGUGGCAUAAU--- -----------.....((((((...(((((((.-(((((((.((((((.(.............-....).)))))))))))))----......(((.....)))....-.)))))))((((...................)))))))))).--- ( -30.04, z-score = -0.51, R) >consensus AUUAGAGAUCGUAGGUAUGUAGAGUCGUGAG___ACGUCGAUAGUUAUCGAUGCCUAUGUUGCGAGCUGUGGGGCACGAGGGAAACUCCGCCCUGAGAAAAGCCUGAGCUAGCGGCACUGCCACAAAAAAAA___GAAAGCAGUUCGUAACAUA ....................................((((((....))))))....((((((((((((((..((((.(((.....))))))).........(((.........))).......................)))))))))))))). (-22.21 = -23.14 + 0.93)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:55 2011