| Sequence ID | dm3.chrX |
|---|---|
| Location | 22,270,786 – 22,270,845 |
| Length | 59 |
| Max. P | 0.845430 |
| Location | 22,270,786 – 22,270,845 |
|---|---|
| Length | 59 |
| Sequences | 4 |
| Columns | 68 |
| Reading direction | reverse |
| Mean pairwise identity | 80.26 |
| Shannon entropy | 0.30576 |
| G+C content | 0.59323 |
| Mean single sequence MFE | -14.43 |
| Consensus MFE | -13.30 |
| Energy contribution | -13.30 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.845430 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 22270786 59 - 22422827 CGCUUCCAGAACA---------UUCUGGCCCUGAAUCGCCUCGGAAGCCCACUCCACGUGACCUCCAG .(((((((((...---------.)))(((........)))..)))))).(((.....)))........ ( -15.00, z-score = -1.93, R) >droSim1.chrX 17016045 59 - 17042790 CGCUUCCAGAACA---------UUCUGGCCCUGAAUCGCCGCGGAAGCCCUCUCCAAGUGACCAACAC .(((((((((...---------.)))(((........)))..)))))).................... ( -14.00, z-score = -1.22, R) >droSec1.super_39 229074 58 - 341166 -GCUUCCAGAACA---------UUCUGGCCCUGAAUCGCCGCGGAAGCCCUCUCCAAGUGACCAACAC -(((((((((...---------.)))(((........)))..)))))).................... ( -13.70, z-score = -1.28, R) >droYak2.chrX 21636592 60 - 21770863 -GCUUCCAGAACAAAUGCACCCUUCUGGCCCUGAAUCGCCGGGGAAGCCUCCUCCAAGUGA------- -((((((((((...........))))))(((((......))))))))).............------- ( -15.00, z-score = -0.08, R) >consensus _GCUUCCAGAACA_________UUCUGGCCCUGAAUCGCCGCGGAAGCCCUCUCCAAGUGACCAACAC .((((((((((...........))))(((........)))..)))))).................... (-13.30 = -13.30 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:52 2011