| Sequence ID | dm3.chrX |
|---|---|
| Location | 22,260,552 – 22,260,645 |
| Length | 93 |
| Max. P | 0.634984 |
| Location | 22,260,552 – 22,260,645 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 68.44 |
| Shannon entropy | 0.49007 |
| G+C content | 0.45116 |
| Mean single sequence MFE | -24.20 |
| Consensus MFE | -12.62 |
| Energy contribution | -14.49 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.634984 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 22260552 93 + 22422827 ---UACUUACUUACUAUCAGGUACAUUUAUGAUCAGGCAAUGUCGUCGAAUACAUUUGACAAUUUU--CGGUCUAGGCACUCCGUGUGCGUGCCACCG ---................(((((......((((.(((...)))((((((....))))))......--.))))...((((.....))))))))).... ( -23.10, z-score = -1.56, R) >droSec1.super_39 212006 84 + 341166 ------UUGUUCUAGCUUUGAGAACAUUGUAAA--GGCAAUGUCGUCGAACACAUUUGACAAUUUU--CGGUCUGGGCGCUCCGUGUGCCAGCU---- ------.......(((((((((((((((((...--.))))))).((((((....))))))...)))--)))....(((((.....)))))))))---- ( -24.20, z-score = -1.19, R) >droYak2.chrX 21624273 91 + 21770863 CAUUUAUUGCUCUCGUUUCGGGAACAUUGCAA---GGCAAUGUCUUCGAACGCAUUUGAUAAUUUCGAAGGUCUGGGCACUGCGUGUGCCAGCU---- ........(((..((((.(((..(((((((..---.)))))))..)))))))..(((((.....)))))......(((((.....)))))))).---- ( -26.50, z-score = -1.16, R) >droEre2.scaffold_4690 18543073 89 + 18748788 CAUUUUUUGUUCUCGUUUUGAGAACAUUACGA---GGCAAUGUCUUCGGACACAUUUGAUAAUUUCGAAGGUUUGGGCUCUGCGCA--CCAGCU---- ......((((.(((((..((....))..))))---)))))((((....))))..(((((.....)))))((((.((((.....)).--))))))---- ( -23.00, z-score = -1.56, R) >consensus ___UU_UUGCUCUCGUUUUGAGAACAUUACAA___GGCAAUGUCGUCGAACACAUUUGACAAUUUC__AGGUCUGGGCACUCCGUGUGCCAGCU____ .......((((((((...)))))))).........(((....((((((((.............))))))))....(((((.....))))).))).... (-12.62 = -14.49 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:48 2011