| Sequence ID | dm3.chrX |
|---|---|
| Location | 22,249,421 – 22,249,517 |
| Length | 96 |
| Max. P | 0.722272 |
| Location | 22,249,421 – 22,249,517 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 81.44 |
| Shannon entropy | 0.32473 |
| G+C content | 0.52693 |
| Mean single sequence MFE | -32.30 |
| Consensus MFE | -24.09 |
| Energy contribution | -25.70 |
| Covariance contribution | 1.61 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.722272 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 22249421 96 - 22422827 -UUUGCUGCAGUUAGCGGCACAUGCAGCAAAUCUUGUUUGCUGUAUGUGGCAUCUUCUGGAGCGGAUUCCCAUGAACCGUAGGCGCCCCUAGCUGGC -.......(((((((.((((((((((((((((...))))))))))))).((.((.....))((((.(((....)))))))..))))).))))))).. ( -38.90, z-score = -2.11, R) >droSim1.chrX 16995120 91 - 17042790 -UUGGCUGCAGUUAGCGGCACAUGCAGCAAAUCUUGUGUGCUGUAUGUGGCAUCAUCUGGAGCGGAUUCCCAUGAACUGUAGACGCCCUCUG----- -..((((((((((.(((.(((((((((((.........))))))))))).).((.....))))((....))...)))))))...))).....----- ( -31.90, z-score = -0.95, R) >droSec1.super_39 201349 91 - 341166 -UUUGCUGCAGUUAGCGGCACAUGCAGCAAAUCUUGUUUGCUGUAUGUGGCAUCAUCUGGAGCGGAUUCCCAUGAACUGUAGACGCCCUCAG----- -....((((((((.(((.((((((((((((((...)))))))))))))).).((.....))))((....))...))))))))..........----- ( -34.60, z-score = -2.53, R) >droYak2.chrX 21613238 97 - 21770863 AUUGGCUGCAGUUAGCGGCACAUGCAGCAAAUCUUGUUUGCUGUAUGUGGCAUCUUCUGGAGCGUAUUCCCAUGAACCGAAGUCGCCCUCAGCUGGC .(..((((.((...(((.((((((((((((((...)))))))))))))).)..((((.((..(((......)))..))))))..)).))))))..). ( -37.60, z-score = -2.29, R) >droEre2.scaffold_4690 18532170 73 - 18748788 ------------------------CAGCAAAUCUUGUUUGCUGUAUGUGGCAUCUUCUAGAGCGGAUUCCCAUGAACCGUAGGCGCCCUCAGCUGGC ------------------------((((......(((((((.((.(((((.((((.(....).))))..))))).)).)))))))......)))).. ( -18.50, z-score = 0.56, R) >consensus _UUGGCUGCAGUUAGCGGCACAUGCAGCAAAUCUUGUUUGCUGUAUGUGGCAUCUUCUGGAGCGGAUUCCCAUGAACCGUAGACGCCCUCAGCUGGC ....(((((.....)))))(((((((((((((...)))))))))))))(((.((.....))((((.(((....)))))))....))).......... (-24.09 = -25.70 + 1.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:47 2011