| Sequence ID | dm3.chrX |
|---|---|
| Location | 22,218,639 – 22,218,721 |
| Length | 82 |
| Max. P | 0.964033 |
| Location | 22,218,639 – 22,218,721 |
|---|---|
| Length | 82 |
| Sequences | 5 |
| Columns | 87 |
| Reading direction | forward |
| Mean pairwise identity | 73.80 |
| Shannon entropy | 0.44232 |
| G+C content | 0.52621 |
| Mean single sequence MFE | -22.92 |
| Consensus MFE | -18.26 |
| Energy contribution | -17.94 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.73 |
| SVM RNA-class probability | 0.964033 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 22218639 82 + 22422827 GAUUG-CCAUGAAGGU----UUCUACUAAAGCGUUUAGAGACCCCUCUAAACCUAGAUUUGUUCGGCUUGUGCCCCGGAAAACCCCG .....-....(((.(.----.(((.....((.((((((((....)))))))))))))..).)))(((....))).(((......))) ( -20.00, z-score = -2.16, R) >droSim1.chrX 16967729 78 + 17042790 GAUUG-CCCUGAAGGUAGGUUUCUACUAAAGCGUUUAGAGGCUCCUCUGAACCU--------CUGGCUUGUGCCCCGGAAAGCCCCG ...((-((.....))))(((((((.....((.((((((((....))))))))))--------..(((....)))..)).)))))... ( -22.30, z-score = -0.66, R) >droSec1.super_39 174604 78 + 341166 GAUUG-CCCUGAAGGUAGGUUUCUACUAAAGCGUUUAGAGGCUCCUCUGAACCU--------CUGGCUUGUGCCCCGGAAAACCACG ...((-((.....))))(((((((.....((.((((((((....))))))))))--------..(((....)))..)).)))))... ( -23.20, z-score = -1.43, R) >droEre2.scaffold_4690 18505205 82 + 18748788 GAUGG-CCACAUGGGU----UUCCACUAAAGCGUUCAGAGGCUCCUCUGAACCCAGAGUCCUUCGGCUAGAGCCGCGGAAAACCCCU .(((.-...)))((((----(((((((...(.((((((((....)))))))))...)))....((((....)))).)).)))))).. ( -30.60, z-score = -2.33, R) >droYak2.chrX 21585666 73 + 21770863 --UGUUCCAUAAAGGU----UUCCACUAAAGCGUUUAGAGGCUGCUCUGAACCACGAG--------CUAGAGUGCCGGAAAACCCCU --...........(((----((((.((((.....)))).(((.((((((.........--------.))))))))))).)))))... ( -18.50, z-score = -1.01, R) >consensus GAUUG_CCAUGAAGGU____UUCUACUAAAGCGUUUAGAGGCUCCUCUGAACCU_GA_____CCGGCUUGUGCCCCGGAAAACCCCG .............(((....((((........((((((((....))))))))............(((....)))..)))).)))... (-18.26 = -17.94 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:46 2011