| Sequence ID | dm3.chrX |
|---|---|
| Location | 22,164,965 – 22,165,051 |
| Length | 86 |
| Max. P | 0.681843 |
| Location | 22,164,965 – 22,165,051 |
|---|---|
| Length | 86 |
| Sequences | 12 |
| Columns | 87 |
| Reading direction | reverse |
| Mean pairwise identity | 84.11 |
| Shannon entropy | 0.33534 |
| G+C content | 0.44864 |
| Mean single sequence MFE | -23.05 |
| Consensus MFE | -16.89 |
| Energy contribution | -16.77 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.681843 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 22164965 86 - 22422827 -CCGUACUUUUUUGUGCAGCGCUGAGCUUAAUGAAAUGAGUUUGUCGAACUUAUUGCUCACUGAGGCAUGCAACAUGCCAUGCCUGC -..((((......))))..((.(((((.......(((((((((...)))))))))))))).))((((((((.....).))))))).. ( -25.31, z-score = -1.54, R) >droAna3.scaffold_12929 2103181 76 + 3277472 ---------AUAUAUGCAACGCCGGGCUUAAUGAAAUGAGUUUGUUCAACUUAUUGCUCGCUGAGGCAUGCAACAUGCCACGCCU-- ---------......((..((.(((((.......((((((((.....))))))))))))).)).((((((...))))))..))..-- ( -20.01, z-score = -0.67, R) >droEre2.scaffold_4690 18462466 87 - 18748788 CCCGUUCUUUUUUGUGCAGCGCCGAGCUUAAUGAAAUGAGUUUGUCGAACUUAUUGCUCACUGAGGCAUGCAACAUGCCAUGCCUGC ...............((((.((.((((.......(((((((((...))))))))))))).....((((((...))))))..)))))) ( -24.31, z-score = -1.28, R) >droYak2.chrX 21541269 86 - 21770863 -CCGUACUUUUUUGUGCAGCGCCGAGCUUAAUGAAAUGAGUUUGUCGAACUUAUUGCUCACUGAGGCAUGCAACAUGCCAUGCCUGC -..((((......)))).((...((((.......(((((((((...)))))))))))))....((((((((.....).))))))))) ( -24.91, z-score = -1.49, R) >droSec1.super_39 123409 86 - 341166 -CCAUACUUGUUUGUGCAGCGCUGAGCUUAAUGAAAUGAGUUUGUCGAACUUAUUGCUCACUGAGGCAUGCAACAUGCCAUGCCUGC -..............((((.(((((((.......(((((((((...))))))))))))))....((((((...))))))..)))))) ( -24.91, z-score = -1.17, R) >droSim1.chrX 16924618 86 - 17042790 -CCAUACUUGUUUGUGCAGCGCUGAGCUUAAUGAAAUGAGUUUGUCGAACUUAUUGCUCACUGAGGCAUGCAACAUGCCAUGCCUGC -..............((((.(((((((.......(((((((((...))))))))))))))....((((((...))))))..)))))) ( -24.91, z-score = -1.17, R) >droVir3.scaffold_12970 4406248 79 - 11907090 --------UUUUUAUGCAGCUCUGAGCUUAAUGAAAUGAGUUUGUCGAACUUAUUGCUUACUGAGGCAUGCAACAUGCCUGGCAUGC --------....(((((..(..(((((.......(((((((((...))))))))))))))..)(((((((...))))))).))))). ( -21.61, z-score = -1.24, R) >droGri2.scaffold_15203 1154906 77 + 11997470 --------UUUUUAUGUGCCGCUGAGCUUAAUGAAAUGAGUUUGUCGAACUUAUUGCUCACCGAGGCAUGCAACAUGCCAGGCAU-- --------.......((((((.(((((.......(((((((((...)))))))))))))).)..((((((...)))))).)))))-- ( -25.81, z-score = -2.88, R) >droMoj3.scaffold_6473 7406833 77 - 16943266 --------UUUUUAUGCAGCCCUGAGCUUAAUGAAAUGAGUUUGUCGAACUUAUUGCUUACUGAGGCAUGCAACAUGCCUCGCAU-- --------.....((((.....(((((.......(((((((((...))))))))))))))..((((((((...))))))))))))-- ( -23.61, z-score = -3.00, R) >droWil1.scaffold_180702 2091852 75 - 4511350 --------UUUUUAUGCAGCGCUGAGCUUAAUGAAAUGAGUUUGUCGAACUUAUUGCUCACUGAGCCAUGCAACAUGCCAGGC---- --------....((((..(((.((.(((((.((((((((((((...)))))))))..))).))))))))))..))))......---- ( -18.70, z-score = -0.43, R) >droPer1.super_10401 972 79 - 1059 -CUGGAAUUUUUCAUGCAGCGCUGAGCUUAAUGAAAUGAGUUUGUCG-ACUUAUUGCUCACCGAGGCAUGCAACAUGCUAA------ -.(((.......(((((..((.(((((.......((((((((....)-)))))))))))).))..))))).......))).------ ( -21.75, z-score = -1.25, R) >dp4.chrXL_group1a 797090 78 + 9151740 ---GGAUUUUUUCAUGCAGCGCUGAGCUUAAUGAAAUGAGUUUGUCGAACUUAUUGCUCACCGAGGCAUGCAACAUGCUAA------ ---((.......(((((..((.(((((.......(((((((((...)))))))))))))).))..))))).......))..------ ( -20.75, z-score = -1.08, R) >consensus _____A_UUUUUUAUGCAGCGCUGAGCUUAAUGAAAUGAGUUUGUCGAACUUAUUGCUCACUGAGGCAUGCAACAUGCCAUGCCU__ ...................((.(((((.......((((((((.....))))))))))))).)).((((((...))))))........ (-16.89 = -16.77 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:45 2011