| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,305,189 – 12,305,318 |
| Length | 129 |
| Max. P | 0.545228 |
| Location | 12,305,189 – 12,305,318 |
|---|---|
| Length | 129 |
| Sequences | 5 |
| Columns | 137 |
| Reading direction | reverse |
| Mean pairwise identity | 74.14 |
| Shannon entropy | 0.44337 |
| G+C content | 0.44394 |
| Mean single sequence MFE | -29.14 |
| Consensus MFE | -19.52 |
| Energy contribution | -20.76 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.545228 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12305189 129 - 23011544 CGAACAGCAAAGAAGCAAAAAAAAAAAAGGAUGCAAAAAGGAUGCUAAAAUAACCGCAUCACGAGCGAGUGACGCUGACAGCAAUGAGCGGGUUUAAUGCAUGUGAUGUUGCAU--CAGCAGCAACAAAUA------ ......((......)).............(((((((...(.((((........((((.((((......)))).((.....)).....)))).......)))).)....))))))--)..............------ ( -30.26, z-score = -1.12, R) >dp4.chr4_group3 5883292 109 + 11692001 ----------------------UGAACAGACAACAGAACAGCAGAAAUAAAAACCACAUCACGAACGAAUGACGCUGACAGCAAUGAGCGGG-UUAAUGCAUUUGAUGCUGCAU--CAGCAGCAGCAGCAAACA--- ----------------------..................((.......................((((((.((.((((.((.....))..)-))).)))))))).((((((..--..))))))))........--- ( -23.30, z-score = -0.89, R) >droYak2.chr2L 8735756 113 - 22324452 ------------------CGAACAGAAAGCAGCAAAAAAGGAUGCAAAAAUAACCGCAUCACGAGCGAAUGACGCUGACAGCAAUGAGCGGGUUUAAUGCAUGUGAUGUUGCACAGCAGCAGAAACAAAUA------ ------------------..........((((((........)))........((((......((((.....))))..((....)).))))......))).(((..((((((...))))))...)))....------ ( -26.80, z-score = -1.04, R) >droSec1.super_16 494815 132 - 1878335 CGAACGAACAGAAACC---AGCAAAAAAGGAUGCAAAAAGGAUGCUAAAAUAACCGCAUCACGAGCGAGUGACGCUGACAGCAAUGAGCGGGUUUAAUGCAUGUGAUGUUGCAU--CAGCAGCAGCAGCAACAAAUA ................---.((.......(((((((...(.((((........((((.((((......)))).((.....)).....)))).......)))).)....))))))--).((....)).))........ ( -32.66, z-score = -0.87, R) >droSim1.chr2L 12105571 132 - 22036055 CGAACGAACAGAAACC---AGCAAAAAAGGAUGCAAAAAGGAUGCUAAAAUAACCGCAUCACGAGCGAGUGACGCUGACAGCAAUGAGCGGGUUUAAUGCAUGUGAUGUUGCAU--CAGCAGCAGCAGCAACAAAUA ................---.((.......(((((((...(.((((........((((.((((......)))).((.....)).....)))).......)))).)....))))))--).((....)).))........ ( -32.66, z-score = -0.87, R) >consensus CGAAC____A__AA_C___AAAAAAAAAGGAUGCAAAAAGGAUGCUAAAAUAACCGCAUCACGAGCGAGUGACGCUGACAGCAAUGAGCGGGUUUAAUGCAUGUGAUGUUGCAU__CAGCAGCAGCAGCAA__A___ .........................................((((......((((...((((......))))((((..((....))))))))))....)))).((.((((((......)))))).)).......... (-19.52 = -20.76 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:34:52 2011