| Sequence ID | dm3.chrX |
|---|---|
| Location | 22,163,889 – 22,163,988 |
| Length | 99 |
| Max. P | 0.899136 |
| Location | 22,163,889 – 22,163,988 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 122 |
| Reading direction | reverse |
| Mean pairwise identity | 67.23 |
| Shannon entropy | 0.56244 |
| G+C content | 0.55611 |
| Mean single sequence MFE | -33.03 |
| Consensus MFE | -12.81 |
| Energy contribution | -14.35 |
| Covariance contribution | 1.54 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.899136 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 22163889 99 - 22422827 UUGCCUUCCGAGUGGCU-----AACAAUUAAGUGGGUCACCAGCCGCAGGUCGCGGGUCGUUGGCAAGUUGAUCAGCCAAUCAAGCAGUCAACCCAU--GACUCAC---------------- ..((...((..((((((-----.((......))((....)))))))).))..))(((((((.((...((((((..((.......)).))))))))))--)))))..---------------- ( -31.00, z-score = -1.17, R) >droYak2.chrX 21540064 99 - 21770863 UAGUCUUCCGAGUGGCC-----AACAAUUAAGUGGGUCACCAGCCGCAGGACGCGCCUCGUUGGCAAGUCAAUCAGCCAAUCAAGCAGUUAGCCCAU--GACCCAC---------------- ..(((........))).-----.........((((((((...((.((.....))((...((((((..........))))))...)).....))...)--)))))))---------------- ( -26.40, z-score = -0.88, R) >droEre2.scaffold_4690 18461288 99 - 18748788 UAGUCCUCCGAGUGGCC-----AACAAUUAAGUGGGUCACCAGCCGCAGGUCGCGGCUCGUUGGCAAGUCGAUCAGCCAAUCAAGCAGUUGGCCCAU--GACCCAC---------------- ..(((...(((.(.(((-----(((.......(((....)))(((((.....)))))..)))))).).)))....((((((......))))))....--)))....---------------- ( -36.00, z-score = -2.51, R) >droAna3.scaffold_12929 2102599 92 + 3277472 -UGGUUCUCGCAGGGCGGCC--AACAAUUAAGUGGGUCACCAGCCGCAGGUCGCGGCACGUUGGCAAGUCAAUCAGCCAAUC-AGCCGUGACCCAG-------------------------- -........((..((.((((--.((......)).)))).))....)).(((((((((..((((((..........)))))).-.)))))))))...-------------------------- ( -37.10, z-score = -2.84, R) >droWil1.scaffold_180702 2418074 121 + 4511350 UUGUUUUACACGAGGCUAGCGAAACAAUUAAGUGGGUCGCUGGUCGCAGGUCGCGGAUCGUUGGCAAGUCAAUCAGCCAAUC-AGCCGUGACCCAGUCCAGUUCACUCACUCGUUCACUCAC ...........(((...(((((.........((((((.(((((.(...((((((((...((((((..........)))))).-..))))))))..).)))))..)))))))))))..))).. ( -45.40, z-score = -4.27, R) >droVir3.scaffold_12970 4405793 82 - 11907090 UAGUUUUACAAGCACUG-----CACAAUUAAGUGGGCCGCGGGC--------------CAUUGGCAAGUCAAUCAGCCAAUCAACCA--UGGCCC-U--GACCAAC---------------- .................-----...........((((((.((..--------------.((((((..........))))))...)).--))))))-.--.......---------------- ( -22.30, z-score = -0.67, R) >consensus UAGUCUUCCGAGUGGCC_____AACAAUUAAGUGGGUCACCAGCCGCAGGUCGCGGCUCGUUGGCAAGUCAAUCAGCCAAUCAAGCAGUUAGCCCAU__GACCCAC________________ ...............................(((((((.....((((.....))))...((((((..........))))))..................)))))))................ (-12.81 = -14.35 + 1.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:44 2011