| Sequence ID | dm3.chrX |
|---|---|
| Location | 22,162,696 – 22,162,786 |
| Length | 90 |
| Max. P | 0.933901 |
| Location | 22,162,696 – 22,162,786 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 76.64 |
| Shannon entropy | 0.39630 |
| G+C content | 0.51619 |
| Mean single sequence MFE | -28.80 |
| Consensus MFE | -15.42 |
| Energy contribution | -16.84 |
| Covariance contribution | 1.42 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.933901 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 22162696 90 - 22422827 GUUGUCCGCACUUGUACGUGCUUGGGUGAGGAAUGGCAGUAUGCCUGCUUGCCCCGUUCGAUAUUGACUUGGAAAACGAGUCAUUUUGAG .......((((......))))..(((..((.(..(((.....)))).))..)))...((((...(((((((.....)))))))..)))). ( -30.80, z-score = -2.57, R) >droSim1.chrX 16922196 74 - 17042790 GUUGUCCGCACUUGUACGUGCAUGGGGUAG----------------GCAUGCCCCGUUCGAUAUUGACUUGGAAAACGAGUCAUUUCGAG .......((((......))))((((((((.----------------...))))))))((((...(((((((.....)))))))..)))). ( -31.00, z-score = -4.01, R) >droSec1.super_39 118457 74 - 341166 GUUGUCCGCACUUGUACGUGCUUGGGGUAG----------------ACAUGCCCCGUUCGAUAUUGACUUGGAAAACGAGUCAUUUCGAG .......((((......))))..((((((.----------------...))))))..((((...(((((((.....)))))))..)))). ( -29.50, z-score = -3.99, R) >droYak2.chrX 21538784 89 - 21770863 GUUGUCCGCACUUGUUCGUGUUUGGGUAGG-CGUGGCAGUUCGCCUGUUUGCCCCGUUCGAUGUUGACUUGGAUAAGGAGUCAUUCCGCG .((((((((((......))))..(((((((-((.(((.....))))))))))))................))))))((((...))))... ( -28.10, z-score = -0.93, R) >droEre2.scaffold_4690 18460071 89 - 18748788 GCUGUCCGCACUUGUACGUGCUUUAGUGAGGCGUGGCAGUAUGCCUGUUU-CCCCGUUCGAUAUUGGGUAGGAUAAGGAGUCAUUUCGAG ..(((((((((......))))......((((((.(((.....))))))))-)((((........))))..)))))..(((....)))... ( -24.60, z-score = -0.10, R) >consensus GUUGUCCGCACUUGUACGUGCUUGGGUGAG___UGGCAGU__GCCUGCUUGCCCCGUUCGAUAUUGACUUGGAAAACGAGUCAUUUCGAG .......((((......)))).((((........(((.....))).......)))).((((...(((((((.....)))))))..)))). (-15.42 = -16.84 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:43 2011