Locus 15887

Sequence ID dm3.chrX
Location 22,129,043 – 22,129,141
Length 98
Max. P 0.945932
window21888 window21889

overview

Window 8

Location 22,129,043 – 22,129,141
Length 98
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 52.83
Shannon entropy 0.76604
G+C content 0.44824
Mean single sequence MFE -28.32
Consensus MFE -9.02
Energy contribution -10.77
Covariance contribution 1.75
Combinations/Pair 1.52
Mean z-score -1.85
Structure conservation index 0.32
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.51
SVM RNA-class probability 0.945932
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 22129043 98 + 22422827
UUGUCUUAUAAUGUC-GUUGAUCCGAUUGGCAAUAAGUCUCUCCCAUAAUUUAGAAAGGGAGGGUAGGAGGCUUAUAGGACGAUACGACUCAGGAUCAA
..(((((((((.(((-((..((...))..)).......(((((((............))))))).....))))))))))))(((.(......).))).. ( -26.90, z-score =  -1.17, R)
>droSim1.chrU 15302561 98 + 15797150
UUGUCUUAUAAUGUC-GUUGAUCCGAUUGGCAAUAAGUCUCUCCCAUAAUUUAGAAAGGGAGGGUAAGAGGCUUAUAGGCCGGUACGACUCAGGAUCAU
...............-..((((((.((((((.(((((((((((((................)))..))))))))))..))))))........)))))). ( -29.09, z-score =  -1.76, R)
>anoGam1.chrU 11629019 89 + 59568033
----------AUGUUUGCGAAUUCUGAUAGCAAUCAGUUUUUCCAAAAGUUUUACCAAACAACUUAGAAGACUGAUUGGUCUGUAACUUUCAGGAUUCG
----------.......((((((((((.((((((((((((((....(((((.........))))).))))))))))))........)).)))))))))) ( -24.40, z-score =  -3.30, R)
>triCas2.chrUn_101 67239 87 - 68148
----------GAGGUGGAGGAGGCGGGAGCGAAUGAGACGUUCUGCGACCUUUCCCACAGCCGACAGCAAGCUGAUUGGCCCGUGGUUCUGGGAAAA--
----------...((((..((((((((((((.......)))))).)).))))..)))).((((((((....))).)))))(((......))).....-- ( -32.90, z-score =  -1.19, R)
>consensus
__________AUGUC_GUGGAUCCGAUUGGCAAUAAGUCUCUCCCAUAAUUUAGAAAGAGAGGGUAGGAGGCUGAUAGGCCGGUACGACUCAGGAUCA_
..................((((((......(((((((((((((((............)))......))))))))))))...((......)).)))))). ( -9.02 = -10.77 +   1.75)

alignment

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secondary structure

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dotplot

Postscript

Window 9

Location 22,129,043 – 22,129,141
Length 98
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 52.83
Shannon entropy 0.76604
G+C content 0.44824
Mean single sequence MFE -22.18
Consensus MFE -6.57
Energy contribution -7.45
Covariance contribution 0.88
Combinations/Pair 1.57
Mean z-score -1.40
Structure conservation index 0.30
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.32
SVM RNA-class probability 0.644750
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 22129043 98 - 22422827
UUGAUCCUGAGUCGUAUCGUCCUAUAAGCCUCCUACCCUCCCUUUCUAAAUUAUGGGAGAGACUUAUUGCCAAUCGGAUCAAC-GACAUUAUAAGACAA
((((((((((((((((......)))............(((((............))))).)))))).........))))))).-............... ( -19.10, z-score =  -0.68, R)
>droSim1.chrU 15302561 98 - 15797150
AUGAUCCUGAGUCGUACCGGCCUAUAAGCCUCUUACCCUCCCUUUCUAAAUUAUGGGAGAGACUUAUUGCCAAUCGGAUCAAC-GACAUUAUAAGACAA
.(((((((((((((((..(((......)))...))).(((((............))))).)))))).........))))))..-............... ( -24.60, z-score =  -2.32, R)
>anoGam1.chrU 11629019 89 - 59568033
CGAAUCCUGAAAGUUACAGACCAAUCAGUCUUCUAAGUUGUUUGGUAAAACUUUUGGAAAAACUGAUUGCUAUCAGAAUUCGCAAACAU----------
(((((.((((.((........((((((((.(((((((..((((....)))).)))))))..)))))))))).)))).))))).......---------- ( -23.20, z-score =  -3.19, R)
>triCas2.chrUn_101 67239 87 + 68148
--UUUUCCCAGAACCACGGGCCAAUCAGCUUGCUGUCGGCUGUGGGAAAGGUCGCAGAACGUCUCAUUCGCUCCCGCCUCCUCCACCUC----------
--.(((((((.(.(....)(((...(((....)))..)))).)))))))((..((.((.((.......)).))..))..))........---------- ( -21.80, z-score =   0.59, R)
>consensus
_UGAUCCUGAGACGUACCGGCCAAUAAGCCUCCUACCCUCCCUGGCAAAAUUAUGGGAAAGACUUAUUGCCAACCGGAUCAAC_AACAU__________
.((((((...........(((......))).......(((((............)))))................)))))).................. ( -6.57 =  -7.45 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:43 2011