| Sequence ID | dm3.chrX |
|---|---|
| Location | 22,115,750 – 22,115,852 |
| Length | 102 |
| Max. P | 0.680988 |
| Location | 22,115,750 – 22,115,852 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 81.56 |
| Shannon entropy | 0.32753 |
| G+C content | 0.54886 |
| Mean single sequence MFE | -30.20 |
| Consensus MFE | -19.68 |
| Energy contribution | -20.24 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.680988 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 22115750 102 - 22422827 ACGUUACCGGGGACGGUUCAAGCGGCAAUCCUUUGUAUUAUUCAAUUAUCUCGUGAUUGAACUGACCCCUCAGGUGAUUGCCCCGCCAACGUCCGUGCCGAC---- ..(((..((.(((((......(.(((((((..........(((((((((...)))))))))((((....))))..))))))).).....))))).))..)))---- ( -30.80, z-score = -1.30, R) >droSim1.chrX 157598 102 + 17042790 ACGUUGCCGGAAACGGUUCAAGCGGCAAUCCUUUGUAUUAUUCAAUUACCUCGUGAUUGAACUGACCCCUCAGGUGAUUGCCCCGCCCACGACCCUGCCGAC---- .(((.((((....))))....(((((((((..........(((((((((...)))))))))((((....))))..)))))))..))..)))...........---- ( -29.80, z-score = -2.51, R) >droSec1.super_39 261975 102 + 341166 ACGUUGCCGGAAACGGUUCAAGCGGCAAUCCAUUGUAUUAUUCAAUUACCUCGUGAUUGAACUGACCCCUCAGGUGAUUGCCCCGCCCACGACUCUGCCGAC---- .(((.((((....))))....((((((((((.........(((((((((...)))))))))((((....))))).)))))))..))..)))...........---- ( -30.20, z-score = -2.37, R) >droYak2.chrX 260879 106 + 21770863 CCGUUGCAGGGGGCGGUUCAAGCGGGAAUCCUUUGUAUUAUUCAAUUACCUCGUGAUUGAACUGACCCCUCAGGUGAUUGCCCCGCCCACGUCCCUGCCUCCUCUC .......(((((((((..(..(((((((((..........(((((((((...)))))))))((((....))))..))))..)))))....)..)).)))))))... ( -34.40, z-score = -1.53, R) >droEre2.scaffold_4690 317484 81 + 18748788 ---------------------GGGGGGAUUCUUCGUAUUAUUCAAUUACCUCGUGAUUGAACUGACCCCUCAGGUGAUGGCCCCGCCCACGUCGCCGCCUCC---- ---------------------((((((..........((((((((((((...))))))))).))))))))).(((((((..........)))))))......---- ( -25.80, z-score = -1.03, R) >consensus ACGUUGCCGGAAACGGUUCAAGCGGCAAUCCUUUGUAUUAUUCAAUUACCUCGUGAUUGAACUGACCCCUCAGGUGAUUGCCCCGCCCACGUCCCUGCCGAC____ .....((((....))))....(.(((((((..........(((((((((...)))))))))((((....))))..))))))).)...................... (-19.68 = -20.24 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:41 2011