Locus 15885

Sequence ID dm3.chrX
Location 22,108,429 – 22,108,528
Length 99
Max. P 0.732675
window21886

overview

Window 6

Location 22,108,429 – 22,108,528
Length 99
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 84.34
Shannon entropy 0.30134
G+C content 0.42381
Mean single sequence MFE -23.63
Consensus MFE -14.34
Energy contribution -14.73
Covariance contribution 0.39
Combinations/Pair 1.17
Mean z-score -2.09
Structure conservation index 0.61
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.53
SVM RNA-class probability 0.732675
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 22108429 99 - 22422827
CCUGUUGCACUUGCAAGCCCAUUGUCCUCACAAG-----AUGUCAUUUUCUAGACCAAGCAGCGUAAAUCUUCGAAAUUUUACAACUGCCAUUUGGG-CAACAGA
.(((((((....))..(((((.((..........-----..(((........)))...((((.(((((..........)))))..))))))..))))-)))))). ( -23.10, z-score =  -1.47, R)
>droSim1.chrX 16877859 104 - 17042790
CCUGUUGCACUUUCAAACCCGUUGUCCUCACAAGAUAUUAUGUCAUUUUCUAGACCAAGCAGCGUAAAUCUUCGAAGUUUUACGACUGCCAUUUGGG-CAACAGA
.(((((((....((.......((((....))))(((.....)))........))((((((((((((((.((....)).)))))).))))...)))))-)))))). ( -27.10, z-score =  -2.95, R)
>droSec1.super_39 71888 104 - 341166
CCUGUUGCACUUUCAAACCCGUUGUCCUCACAAGAUAUUAUGUCAUUUUCUAGACCAAGCAGCGUAAAUCUUCGAAAUUUUACGACUGUCAUUUGGG-CAACAGA
.(((((((....((.......((((....))))(((.....)))........))((((((((((((((..........)))))).))))...)))))-)))))). ( -24.50, z-score =  -2.40, R)
>droYak2.chrX 21502328 104 - 21770863
CCUGUUGCACUUUUAAACGCAGUGCCCCCACAAGAUAUUAUGUCAUUUUCUAGAGCAAGCAGCGUAAGUCUUCGACAUUUUACGACUGCCAUUUGGG-CAACAGA
.(((((((..........((.(((....)))..(((.....)))..........))..((((((((((..........)))))).)))).......)-)))))). ( -26.10, z-score =  -1.85, R)
>droEre2.scaffold_4690 18423543 104 - 18748788
CCUGUUGCACUUUUAAACGCAUUGCCCCCACACGAUAUUAUGUCAUUUUCUAGACCAAGCAGCGUAAAUCUUCGACAUUUUACGACUGCCAUUUGGG-CAACAGA
.(((((((.........................(((.....)))..........((((((((((((((..........)))))).))))...)))))-)))))). ( -25.90, z-score =  -3.31, R)
>droAna3.scaffold_12929 2069074 91 + 3277472
CCUGUUGCACUCUCUAUCG----------ACA---UAUUAUGUCAUUUUCUAGUUCAUGUCGCGUAAAUC-UCGACUUUUUACGGCUGUCAUUCGGGACAACAUA
..(((((...((((....(----------(((---(...)))))........((....((((.(.....)-.)))).....))...........))))))))).. ( -15.10, z-score =  -0.54, R)
>consensus
CCUGUUGCACUUUCAAACCCAUUGUCCUCACAAGAUAUUAUGUCAUUUUCUAGACCAAGCAGCGUAAAUCUUCGAAAUUUUACGACUGCCAUUUGGG_CAACAGA
.(((((((.....................(((........)))...........((((((((((((((..........)))))).))))...))))).)))))). (-14.34 = -14.73 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:40 2011