| Sequence ID | dm3.chrX |
|---|---|
| Location | 22,079,156 – 22,079,255 |
| Length | 99 |
| Max. P | 0.905948 |
| Location | 22,079,156 – 22,079,255 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 88.93 |
| Shannon entropy | 0.14841 |
| G+C content | 0.34861 |
| Mean single sequence MFE | -19.97 |
| Consensus MFE | -17.25 |
| Energy contribution | -16.70 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.905948 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 22079156 99 + 22422827 AGAAUAAUGUAGCAUGGGCCCAUGUAGCAUUGAACUUGAGCUCAAGUUCGAUUUCAAGCCCUCAUUUACUCAUUUAUUACAUAAACUGUUAUGAAUUCU (((((...((((...((((...((....((((((((((....))))))))))..)).))))....))))..........(((((....))))).))))) ( -22.80, z-score = -2.11, R) >droSec1.super_39 55548 91 + 341166 AGAAUAAUGUAGCAUACGGCCAUGUAGCAUUGAACUUGAGCUCAAGUUCGAUUUCAAACCCUCAUUUA--------UUACAGAAAUUGUUUUGAAUUCU .....(((((.((((......)))).)))))(((((((....)))))))((.((((((....((.((.--------.......)).)).)))))).)). ( -18.00, z-score = -1.43, R) >droSim1.chrX 16859463 91 + 17042790 AGAAUAAUGUAGCAUACGCCCACGUAGCAUUGAACUUGAGCUCAAGUUCGAUUUCAAACCCUCAUUUA--------UUACAGAAAUUGUUUUGAAUUCU ((((((((...((.((((....))))))((((((((((....))))))))))................--------........))))))))....... ( -19.10, z-score = -2.64, R) >consensus AGAAUAAUGUAGCAUACGCCCAUGUAGCAUUGAACUUGAGCUCAAGUUCGAUUUCAAACCCUCAUUUA________UUACAGAAAUUGUUUUGAAUUCU (((((((((..((.((((....))))))((((((((((....))))))))))..........)))).............(((((....))))).))))) (-17.25 = -16.70 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:39 2011