| Sequence ID | dm3.chrX |
|---|---|
| Location | 22,076,425 – 22,076,538 |
| Length | 113 |
| Max. P | 0.850913 |
| Location | 22,076,425 – 22,076,535 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.46 |
| Shannon entropy | 0.38979 |
| G+C content | 0.37003 |
| Mean single sequence MFE | -24.92 |
| Consensus MFE | -12.36 |
| Energy contribution | -11.64 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.755282 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 22076425 110 + 22422827 GUUGGCCGAGUUAUGGAAACACAUUGACUUAAAAAUGCCAUAAUUGGCAUAUUAACUUCCUUUUCGAAAAAAAAACCAUUUUUUUUGCGGCUUUUUGC---CCAAGCCGACAG------- ((((((.((((((((....))...))))))....((((((....))))))..............(((((((((.....))))))))).(((.....))---)...))))))..------- ( -30.50, z-score = -3.70, R) >droSim1.chrX 16855902 109 + 17042790 GUUUGCCGAGUUAUGGAAACACAUUAAGUUAAAAAUGCCAUAAUUGGCAUAUUAACUUCCCUUUCGAAAAAAACAUUGUUUUUUU-GCGGCUUUUUGC---CCAAGCCGACAG------- ((((..((((...((....))....(((((((..((((((....)))))).)))))))....))))....))))..((((..(((-(.(((.....))---)))))..)))).------- ( -27.90, z-score = -2.90, R) >droSec1.super_39 51561 109 + 341166 GUUUGCCGAGUUAUGGAAACACAUUAAGUUAAAAAUGACAUAAUUGGCAUAUUAACUUCCCUUUCGAAAAAAACAUUGUUUUUUU-GCGGCUUUUUGC---CCAAGCCGACAG------- ...((((.(((((((....).......((((....))))))))))))))...............((((((((......)))))))-)((((((.....---..))))))....------- ( -21.40, z-score = -0.96, R) >droYak2.chrX 21485504 119 + 21770863 GUUCGCUGAAUUAUGAAUCCACAUUCAUUUCAAAAUGCCACAAUUGGCAUAUUAACUUCUAUUUCGAAAAUACCCUUGGUUUUUCUGUAG-UUUUUGCAACCCGAACCAGCAGAAACAAC ......((((..((((((....))))))))))..((((((....))))))...............(((((.(((...))))))))....(-(((((((...........))))))))... ( -22.90, z-score = -2.17, R) >droEre2.scaffold_4690 18407359 115 + 18748788 GUUGGCCAAGUUA---AUUUACUUUAAUUUCAAAAUGCCACAAUUGGCAUACUAGCUUCC-UUUCGAAAAUACCCUUGUUUUUCG-CUGGCUUUUUGCAGCCCAAGUCGACAGAAACUAC ((((((.((((((---(......)))))))....((((((....))))))..........-...((((((.........))))))-..((((......))))...))))))......... ( -21.90, z-score = -0.82, R) >consensus GUUGGCCGAGUUAUGGAAACACAUUAAGUUAAAAAUGCCAUAAUUGGCAUAUUAACUUCCCUUUCGAAAAAAACAUUGUUUUUUU_GCGGCUUUUUGC___CCAAGCCGACAG_______ (((.(((((((((((....)).............((((((....))))))..)))))........((((((.......))))))...))))..((((.....))))..)))......... (-12.36 = -11.64 + -0.72)
| Location | 22,076,430 – 22,076,538 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 73.88 |
| Shannon entropy | 0.44936 |
| G+C content | 0.36332 |
| Mean single sequence MFE | -23.44 |
| Consensus MFE | -10.52 |
| Energy contribution | -11.00 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.850913 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 22076430 108 + 22422827 CCGAGUUAUGGAAACACAUUGACUUAAAAAUGCCAUAAUUGGCAUAUUAACUUCCUUUUCGAAAAAAAAACCAUUUUUUUUGCGGCUUUUU--GCCCAAGCCGACAGUCU--------- ..((((((((....))...))))))....((((((....))))))..............(((((((((.....)))))))))((((((...--....)))))).......--------- ( -25.00, z-score = -2.76, R) >droSim1.chrX 16855907 107 + 17042790 CCGAGUUAUGGAAACACAUUAAGUUAAAAAUGCCAUAAUUGGCAUAUUAACUUCCCUUUCGAAAAAAACAUUGUUUUUUU-GCGGCUUUUU--GCCCAAGCCGACAGUCU--------- .((((...((....))....(((((((..((((((....)))))).)))))))....))))........((((((..(((-(.(((.....--)))))))..))))))..--------- ( -27.60, z-score = -3.24, R) >droSec1.super_39 51566 107 + 341166 CCGAGUUAUGGAAACACAUUAAGUUAAAAAUGACAUAAUUGGCAUAUUAACUUCCCUUUCGAAAAAAACAUUGUUUUUUU-GCGGCUUUUU--GCCCAAGCCGACAGUCU--------- .((((...((....))....(((((((..(((.((....)).))).)))))))....))))........((((((..(((-(.(((.....--)))))))..))))))..--------- ( -20.50, z-score = -1.05, R) >droYak2.chrX 21485509 119 + 21770863 CUGAAUUAUGAAUCCACAUUCAUUUCAAAAUGCCACAAUUGGCAUAUUAACUUCUAUUUCGAAAAUACCCUUGGUUUUUCUGUAGUUUUUGCAACCCGAACCAGCAGAAACAACAAUCA .((((..((((((....))))))))))..((((((....))))))...............(((((.(((...))))))))(((.((((((((...........)))))))).))).... ( -24.60, z-score = -3.24, R) >droEre2.scaffold_4690 18407364 115 + 18748788 CCAAGUU---AAUUUACUUUAAUUUCAAAAUGCCACAAUUGGCAUACUAGCUUCC-UUUCGAAAAUACCCUUGUUUUUCGCUGGCUUUUUGCAGCCCAAGUCGACAGAAACUACAGCCA ..(((((---((......)))))))....((((((....))))))..........-....(((((.........)))))((((..(((((((.((....)).).))))))...)))).. ( -19.50, z-score = -0.66, R) >consensus CCGAGUUAUGGAAACACAUUAAGUUAAAAAUGCCAUAAUUGGCAUAUUAACUUCCCUUUCGAAAAAAACAUUGUUUUUUU_GCGGCUUUUU__GCCCAAGCCGACAGUCU_________ ..((((((((....)).............((((((....))))))..)))))).............................((((((.........))))))................ (-10.52 = -11.00 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:38 2011