| Sequence ID | dm3.chrX |
|---|---|
| Location | 22,076,250 – 22,076,315 |
| Length | 65 |
| Max. P | 0.905130 |
| Location | 22,076,250 – 22,076,315 |
|---|---|
| Length | 65 |
| Sequences | 5 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 84.62 |
| Shannon entropy | 0.27925 |
| G+C content | 0.43514 |
| Mean single sequence MFE | -15.28 |
| Consensus MFE | -11.10 |
| Energy contribution | -10.90 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.905130 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 22076250 65 - 22422827 GUUUCUUAUUGAGUACUCGCCCGAAUUGUCAUUAUCCUUUGUUAAAUUUGUCGCAGGUGCUCCUU ..........((((((..((.((((((..((........))...))))))..))..))))))... ( -15.60, z-score = -3.78, R) >droAna3.scaffold_12929 2057216 64 + 3277472 CUUGUUUAUUGAGUGCCCUCCUGGAAUGUCAUUAUCUCUAGCU-UCUGUACAGAAGGUGAUCCUU ............((((....((((((((....))).)))))..-...))))..((((....)))) ( -9.10, z-score = 1.01, R) >droEre2.scaffold_4690 18407168 65 - 18748788 GUUGCUUAUUGAGUACUCGCCCGAAUCGUCAUUAUCCUUUGGUGUAUUUGUCGCAGGUGCUCCUU ..........((((((..((.((((((..((........))..).)))))..))..))))))... ( -16.90, z-score = -2.57, R) >droSec1.super_39 51372 65 - 341166 GUUGCUUAUUGAGUACUCGCCCGAAUUGUCAUUAUCCUUUGGUGAAUUUGUCGCAGGUGCUCCUU ..........((((((..((.(((((..((((((.....)))))))))))..))..))))))... ( -17.40, z-score = -2.59, R) >droSim1.chrX 16855718 65 - 17042790 GUUGCUUAUUGAGUACUCGCCCGAAUUGUCAUUAUCCUUUGGUGAAUUUGUCGCAGGUGCUCCUU ..........((((((..((.(((((..((((((.....)))))))))))..))..))))))... ( -17.40, z-score = -2.59, R) >consensus GUUGCUUAUUGAGUACUCGCCCGAAUUGUCAUUAUCCUUUGGUGAAUUUGUCGCAGGUGCUCCUU ..........(((((((.((.((((((..((........))..).)))))..)).)))))))... (-11.10 = -10.90 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:37 2011