Locus 15881

Sequence ID dm3.chrX
Location 22,074,805 – 22,074,915
Length 110
Max. P 0.601791
window21881

overview

Window 1

Location 22,074,805 – 22,074,915
Length 110
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 84.18
Shannon entropy 0.27736
G+C content 0.36427
Mean single sequence MFE -25.80
Consensus MFE -18.12
Energy contribution -18.92
Covariance contribution 0.80
Combinations/Pair 1.19
Mean z-score -1.71
Structure conservation index 0.70
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.23
SVM RNA-class probability 0.601791
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 22074805 110 - 22422827
UUCAUUCGAGCGCACUGAAGUGCAAGAAUUUUGGGAAUUUAUGCCUUUUUCUUUUAAGAUUAUUGCCCAUAAUUUUAGGGGAAAACAGCCAAUGUACAUGUUUUCCAUUC
...((((..((((......))))..))))....((((..((((....((((((((((((((((.....))))))))))))))))(((.....))).))))..)))).... ( -27.30, z-score =  -2.09, R)
>droEre2.scaffold_4690 18405727 110 - 18748788
UUCAUUCGUGCUCACUGAAGUGCAUGUGUGCUGCGAAUCUAUGCCCCUUUCUUCCUGGAUUAUUACCCAUAAUUUUAUGGGAAAACAGCAAACCAAAAUGUUAUCCAUUC
...((((((((.(((((.....)).))).)).)))))).................(((((.....((((((....)))))).....((((........)))))))))... ( -23.00, z-score =  -1.28, R)
>droYak2.chrX 21483765 109 - 21770863
CUCAUUCAAGCUCACUGAAGUGCAAGAAUGCUAAGAGUUUAUGC-UCCUUCUUUUUAGAUUAUUACCCAUAAUUUUAUGGGAAAACAGCAAACGAAAAUGUUUUCCACUC
....(((((((((((....))(((....)))...)))))).(((-(...(((....)))......((((((....)))))).....))))...))).............. ( -18.70, z-score =  -0.36, R)
>droSec1.super_39 49852 110 - 341166
UCCAUUCAAGCGCACUGAAGUGCAAGAAUGUUUGGAAUUUAUGCAUAUUUCUUCUAAGGUUAUUGCCCAUAAUUUUAGGGGAAAACAGCCAAUGCAAAUGUUUUCCAUUU
..(((((..((((......))))..)))))..(((((.....((((.((((((((((((((((.....))))))))))))))))...((....))..)))).)))))... ( -30.10, z-score =  -2.48, R)
>droSim1.chrX 16854174 110 - 17042790
UCCAUUCAAGCGCACUGAAGUGCAAGAAUGUUUGGAAUUUAUGCCUAUUUCUUCUAAGGUUAUUGCCCAUAAUUUUAGGGGAAAACAGCCAAUGCAAAUGUUUUCCAUUU
..(((((..((((......))))..)))))..(((((..(((.....((((((((((((((((.....))))))))))))))))...((....))..)))..)))))... ( -29.90, z-score =  -2.34, R)
>consensus
UUCAUUCAAGCGCACUGAAGUGCAAGAAUGUUGGGAAUUUAUGCCUAUUUCUUCUAAGAUUAUUGCCCAUAAUUUUAGGGGAAAACAGCCAAUGAAAAUGUUUUCCAUUC
..(((((..((((......))))..)))))....((((..............(((((((((((.....)))))))))))((((((((...........)))))))))))) (-18.12 = -18.92 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:36 2011