| Sequence ID | dm3.chrX |
|---|---|
| Location | 22,071,184 – 22,071,292 |
| Length | 108 |
| Max. P | 0.739532 |
| Location | 22,071,184 – 22,071,292 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.91 |
| Shannon entropy | 0.40848 |
| G+C content | 0.39313 |
| Mean single sequence MFE | -26.02 |
| Consensus MFE | -14.22 |
| Energy contribution | -16.41 |
| Covariance contribution | 2.19 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.739532 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 22071184 108 + 22422827 ---AAAUGUGUUUAGGAUCAAGUCUGUGAUCACUUGGGCACACCUAAGAACGCAGCUAAUAUGAUAGGUACCUGCGAAUAACUAGAAAACA-UAUCUCUAACAGAAAUUACC-------- ---..((((((((..(((((......))))).((((((....))))))..((((((((......)))....)))))..........)))))-))).................-------- ( -22.40, z-score = -1.14, R) >droSim1.chrX 16850671 109 + 17042790 ---GACUGUGUUUAAGAUCAAGGCUGUGAUCACUUGGGCCAGCCGAAGAACGCAGUUGAUAUGAUAGGUACCUGAGAUUAACUUGAAAAAAAUAUCUCGAACCGAAAGGACC-------- ---(((((((((...(((((......))))).(((.((....)).)))))))))))).........(((...((((((....((....))...))))))..((....)))))-------- ( -31.60, z-score = -3.38, R) >droSec1.super_39 46559 109 + 341166 ---GACUGUGUUUAAGAUCAAGGCUGUGAUCACUUGGGCCAGCCGAAGAACGCAGUUGAUAUGAUAGGUACCUGAGAUUAACUAGAAAAAAAUAUCUCGAACCGAUAGGACC-------- ---(((((((((...(((((......))))).(((.((....)).)))))))))))).........(((...((((((...............))))))..((....)))))-------- ( -27.66, z-score = -2.05, R) >droYak2.chrX 21479877 118 + 21770863 AAAUAUAGUGCUUAAGAUCAAG-CUGUGAUCACUUAGGCAUCCCUUAGAACAACGUUCAUAUAGGAAGUACCUGCGAUUAGCUAGAAGGAA-GAUCUCAAAUAAUUAUAUUUAUAUAACU (((((((((((((......)))-)((.((((......((.(((..((((((...)))).))..))).)).(((((.....))....)))..-)))).))....)))))))))........ ( -22.40, z-score = -0.58, R) >consensus ___GACUGUGUUUAAGAUCAAGGCUGUGAUCACUUGGGCAAGCCGAAGAACGCAGUUGAUAUGAUAGGUACCUGAGAUUAACUAGAAAAAA_UAUCUCGAACAGAAAGGACC________ ...(((((((((...(((((......))))).((((((....))))))))))))))).........(((....(((((...............)))))...((....)))))........ (-14.22 = -16.41 + 2.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:35 2011