| Sequence ID | dm3.chrX |
|---|---|
| Location | 22,063,219 – 22,063,344 |
| Length | 125 |
| Max. P | 0.505948 |
| Location | 22,063,219 – 22,063,344 |
|---|---|
| Length | 125 |
| Sequences | 12 |
| Columns | 137 |
| Reading direction | forward |
| Mean pairwise identity | 86.21 |
| Shannon entropy | 0.28582 |
| G+C content | 0.45263 |
| Mean single sequence MFE | -36.14 |
| Consensus MFE | -23.50 |
| Energy contribution | -23.13 |
| Covariance contribution | -0.37 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.505948 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 22063219 125 + 22422827 AGAG-GCAAUUCAUUAGCUUUAAUUUAGGUAAAUGUCCUUGGUCCUUGUGGCG------UUGCCUCUUGCGGU--GAAUGUCGCAAAUGCAACUAAAAUGUUGCGGUUACCGUCAUUUCCG---CCCACAGCCACGA ((((-(((((.((((.((((......)))).))))......(.((....))))------)))))))).((((.--(((((.((....((((((......)))))).....)).))))))))---)............ ( -37.50, z-score = -1.65, R) >droSim1.chrX_random 5684914 124 + 5698898 AGAG-GCAAUUCAUUAGCUUUAAUUUAGGUAAAUGUCCUUGGUCCUUGUGGCG------UUGCCUCUUGCGGU--GAAUGUCGCAAAUGCAACUAAAAUGUUGCGGUUACCGUCAUUUCCA---CCCACAGCCACG- ...(-((....((((.((((......)))).)))).....(((....((((((------..(((..((((((.--.....))))))..(((((......))))))))...))))))....)---))....)))...- ( -35.80, z-score = -1.76, R) >droSec1.super_39 38941 124 + 341166 AGAG-GCAAUUCAUUAGCUUUAAUUUAGGUAAAUGUCCUUGGUCCUUGUGGCG------UUGCCUCUUGCGGU--GAAUGUCGCAAAUGCAACUAAAAUGUUGCGGUUACCGUCAUUUCCA---CCCACAGCCACG- ...(-((....((((.((((......)))).)))).....(((....((((((------..(((..((((((.--.....))))))..(((((......))))))))...))))))....)---))....)))...- ( -35.80, z-score = -1.76, R) >droYak2.chrX 21471204 124 + 21770863 AGAG-GCAAUUCAUUAGCUUUAAUUUAGGUAAAUGUCCUUGGUCCUUGUGGCG------UUGCCUCUUGCGGU--GAAUGUCGCAAAUGCAACUAAAAUGUUGCGGUUACCGUCAUUCCCA---CCCACAGCCACG- .(((-((....((((.((((......)))).))))......).))))(((((.------..((.....))((.--(((((.((....((((((......)))))).....)).))))))).---......))))).- ( -36.90, z-score = -2.05, R) >droEre2.scaffold_4690 18394273 124 + 18748788 AGAG-GCAAUUCAUUAGCUUUAAUUUAGGUAAAUGUCCUUGGUCCUUGCGGCG------UUGCCUCUUGCGGU--GAAUGUCGCAAAUGCAACUAAAAUGUUGCGGUUACCGUCACGCCCG---CCCACAGCCACG- ...(-((....((((.((((......)))).)))).....(((((((((((((------(((((......)))--.))))))))))..(((((......)))))))..)))..........---......)))...- ( -36.50, z-score = -0.76, R) >droAna3.scaffold_12929 2046288 124 - 3277472 AGAG-GCAAUUCAUUAGCUUUAAUUUAGGUAAAUGUCCUUGGUCCUUGUGGCG------UUGCCUCUUGCGGU--GAGCGUCGCAAAUGCAACUAAAAUGUUGCGGUUACCAUCAUUCCCG---CCCACUGCCACA- ...(-(((...((((.((((......)))).))))....((((((((((((((------(((((......)))--.))))))))))..(((((......)))))))..)))).........---.....))))...- ( -37.70, z-score = -1.68, R) >dp4.chrXL_group1a 725552 130 - 9151740 AGAGAGCAAUUCAUUAGCUUUAAUUUAGGUAAAUGUCCUUGGUCCUUGUGGCA------UUGCCUCUUGUGGUUUGAACGUCGCAAAUGCAACUAAAAUGUUGCGGUUACCAUCGUUUUCC-AUUCCGCAUGCCCCA ((.((.(((..((((.((((......)))).))))...))).))))((.((((------(.((.....((((...(((((.......((((((......))))))........))))).))-))...))))))).)) ( -33.76, z-score = -1.35, R) >droPer1.super_15 1383302 129 - 2181545 AGAG-GCAAUUCAUUAGCUUUAAUUUAGGUAAAUGUCCUUGGUCCUUGUGGCA------UUGCCUCU-AUGGUUUGAACGUCCCAAAUGCAACUAAAAUGUUGCGGUUACCAUCGUUUUCCCAUUCCGCAUGCCCCA .(((-((....((((.((((......)))).))))......).))))(.((((------(.((....-((((...(((((.......((((((......))))))........)))))..))))...))))))).). ( -33.46, z-score = -1.63, R) >droWil1.scaffold_180702 2352096 129 - 4511350 AGAG-GCAAUUCAUUAGCUUUAAUUUAGGUAAAUGUCCUUGGUCCUUGUGGCGACGGCAUUGCCUCUUGUGGC--GAACGUCGCAAAUGCAACUAAAAUGUUGCGGUAACCGCCAUUUUCA---UUUGGG-CCACC- .(((-(.....((((.((((......)))).)))).))))(((((..(((((((((...(((((......)))--)).))))))....(((((......)))))(((....))).....))---)..)))-))...- ( -46.40, z-score = -3.32, R) >droVir3.scaffold_12970 4329133 111 + 11907090 AGAG-GCAAUUCAUUAGCUUUAAUUUAGGUAAAUGUCCUUGGUCCUUGUGGUG------CUGCCUCUUGUGGC--GAACGUUGCAAAUGCAACUAAAAUGUUGCGGUUACCUCCAUUUUC----------------- .(((-((....((((.((((......)))).)))).....(((((....)).)------)))))))(((..((--....))..)))..(((((......)))))((......))......----------------- ( -30.30, z-score = -1.61, R) >droMoj3.scaffold_6473 7308332 121 + 16943266 AGAG-GCAAUUCAUUAGCUUUAAUUUAGGUAAAUGUCCUUGGUCCUUGUGGUG------CUGCCUCUUGUGGC--GAACGUUGCAAAUGCAACUAAAAUGUUGCGGUUACCUCCAUUUUCA---UUUGC--UUAC-- .(((-((.........)))))....((((((((((....(((.......((((------..(((..(((..((--....))..)))..(((((......)))))))))))).)))....))---)))))--))).-- ( -34.10, z-score = -2.07, R) >droGri2.scaffold_15203 1086228 121 - 11997470 AGAG-GCAAUUCAUUAGCUUUAAUUUAGGUAAAUGUCCUUGGUGCUUCUGGCG------UUGCCUCUCGUGGC--GAACGUUGCAAAUGCAACUAAAAUGUUGCGGUUACCGCUGUUUUCA---UUUGC--UUGC-- ((((-(((...((((.((((......)))).)))).......)))))))((((------(((((......)))--.))))))(((((((((((......)))))((..((....))..)))---)))))--....-- ( -35.50, z-score = -1.49, R) >consensus AGAG_GCAAUUCAUUAGCUUUAAUUUAGGUAAAUGUCCUUGGUCCUUGUGGCG______UUGCCUCUUGCGGU__GAACGUCGCAAAUGCAACUAAAAUGUUGCGGUUACCGUCAUUUCCA___CCCACAGCCACG_ ...........((((.((((......)))).)))).....(((((((((((((........(((......))).....))))))))..(((((......)))))))..))).......................... (-23.50 = -23.13 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:34 2011