| Sequence ID | dm3.chrX |
|---|---|
| Location | 22,062,248 – 22,062,354 |
| Length | 106 |
| Max. P | 0.906456 |
| Location | 22,062,248 – 22,062,354 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 90.82 |
| Shannon entropy | 0.15931 |
| G+C content | 0.52560 |
| Mean single sequence MFE | -39.58 |
| Consensus MFE | -32.22 |
| Energy contribution | -32.82 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.906456 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 22062248 106 + 22422827 CCGAGACUGUGCUCACGUGAGUACCAGGACAUCGA--CUUAGUGUCCUGGGAUUGGUAAUUGCAUUGCCAUGGAUACGCCAACUACGUCUUCGAGUGCAUUACCCGUA .......((..(((((((.(((.(((((((((...--....)))))))))...(((((((...)))))))(((.....))))))))))....)))..))......... ( -33.40, z-score = -1.27, R) >droSim1.chrX_random 5684047 106 + 5698898 CGGAGACUGUGCUCACGUUAGUGCCAGGACAUCGA--CUUAGUGUCCUGGGAUUGGUAAUUGCAUUGCCAUGGAUACGCCAACUGCGUCUUCGAGUGCAUUACUCGUA ..(((..((..(((.....(((.(((((((((...--....))))))))).)))((((((...))))))..(((.((((.....)))).))))))..))...)))... ( -38.60, z-score = -2.24, R) >droSec1.super_39 38100 106 + 341166 CGGAGACUGUGCUCACGUUAGUGCCAGGACAUCGA--CUUAGUGUCCUGGGAUUGGUAAUUGCAUUGCCAUGGAUACGCCAACUGCGUCUUCGAGUGCAUUACUCGUA ..(((..((..(((.....(((.(((((((((...--....))))))))).)))((((((...))))))..(((.((((.....)))).))))))..))...)))... ( -38.60, z-score = -2.24, R) >droYak2.chrX 21470033 108 + 21770863 CCGAGCCUGUGCUCACGUGAUUGCCAGGACACCAGGUCUUGGUGUCCUGGGACUGGCAAUUGCAUUGCCAUGGAUACGACAACUGCGUCUUCAAGUGCAUUACGCGUA ..((((....))))(((((....((((((((((((...)))))))))))).(((((((((...)))))).((((.(((.(....)))).)))))))......))))). ( -43.40, z-score = -2.51, R) >droEre2.scaffold_4690 18393294 103 + 18748788 CCGAGCCUGUGCUCACGUGAGUGCCAGGACACCGA--CUUGGUGUCCUGGGAUUGGUAAUUGCAUUGCCAUGGAUACGC--ACUGCGUCU-CGAGUGCAUUACGCAUA .((((((.((((.(((....)))((((((((((..--...))))))))))...(((((((...))))))).......))--)).).).))-)).((((.....)))). ( -43.90, z-score = -3.07, R) >consensus CCGAGACUGUGCUCACGUGAGUGCCAGGACAUCGA__CUUAGUGUCCUGGGAUUGGUAAUUGCAUUGCCAUGGAUACGCCAACUGCGUCUUCGAGUGCAUUACGCGUA .......((..(((.....(((.(((((((((.........))))))))).)))((((((...))))))..(((.((((.....)))).))))))..))......... (-32.22 = -32.82 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:33 2011