| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,983,799 – 21,983,891 |
| Length | 92 |
| Max. P | 0.921664 |
| Location | 21,983,799 – 21,983,891 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 78.02 |
| Shannon entropy | 0.39040 |
| G+C content | 0.41021 |
| Mean single sequence MFE | -19.36 |
| Consensus MFE | -13.04 |
| Energy contribution | -12.21 |
| Covariance contribution | -0.83 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.29 |
| SVM RNA-class probability | 0.921664 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21983799 92 - 22422827 CGCUGUACGUUCUUUUCCUGCUCGUUUUGCAAAAGUUUUGUUUUUCCGAACAAAACUACAAACACAAGCAAACAUGCGC-UUCCACACACUCU------------- .((.(((.(((.......((((.((((((....((((((((((....)))))))))).)))).)).))))))).)))))-.............------------- ( -17.11, z-score = -1.76, R) >droEre2.scaffold_4690 18333121 92 - 18748788 CGCCAUGCGUACUCUUUCUGCUCGUUUUGCAAAAGUUUUGUUUUUCCGAACAAAACUACAAACACAAGCAAACAUGCGC-UUUCACACACUCU------------- ......(((((.......((((.((((((....((((((((((....)))))))))).)))).)).))))....)))))-.............------------- ( -18.70, z-score = -2.26, R) >droSim1.chrX 16778125 92 - 17042790 CGCUGUAUGUUCUUUUCCUGCUCGUUUUGCAAAAGUUUUGUUUUUCCGAACAAAACUACAAACACAAGCAAACCUGCGC-UUCCCCACACUAU------------- .((.(((.(((.......((((.((((((....((((((((((....)))))))))).)))).)).))))))).)))))-.............------------- ( -17.11, z-score = -2.22, R) >droSec1.super_55 133997 92 - 187931 CGCUGUAUGUUCUUUUCCUGCUCGUUUUGCAAAAGUUUUGUUUUUCCGAACAAAACUACAAACACAAGCAAACCUGCGC-UUCCCCACACUAU------------- .((.(((.(((.......((((.((((((....((((((((((....)))))))))).)))).)).))))))).)))))-.............------------- ( -17.11, z-score = -2.22, R) >dp4.chrXL_group1a 8473625 82 - 9151740 CGUUGUGCGUCGUCGUUCUGUUCGUUUUGCAAAAGUUUUGUUUUUCGGAACAAAACUACAAACACAAGCAAACAGGCGC-UUU----------------------- ......(((((...(((.((((.((((((....((((((((((....)))))))))).)))).)).))))))).)))))-...----------------------- ( -21.40, z-score = -1.20, R) >droPer1.super_15 867066 82 - 2181545 CGUUGUGCGUCGUCGUUCUGUUCGUUUUGCAAAAGUUUUGUUUUUCGGAACAAAACUACAAACACAAGCAAACAGGCGC-UUU----------------------- ......(((((...(((.((((.((((((....((((((((((....)))))))))).)))).)).))))))).)))))-...----------------------- ( -21.40, z-score = -1.20, R) >droMoj3.scaffold_6473 7229788 100 - 16943266 CGAUGUGCGUUCGCA------UCGCUUUGCGAAAGUUUUGUUUUUUGAAACGAAACUACAAACACAAGCAAACACGCUCAUUUCACACACUCAAAUAUAUAAGCCA .((((.(((((((((------......))))).((((((((((....))))))))))................)))).))))........................ ( -22.70, z-score = -2.05, R) >consensus CGCUGUGCGUUCUCUUCCUGCUCGUUUUGCAAAAGUUUUGUUUUUCCGAACAAAACUACAAACACAAGCAAACAUGCGC_UUUCACACACUCU_____________ .((...(((.............)))...))...((((((((((....))))))))))..........((......))............................. (-13.04 = -12.21 + -0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:30 2011