| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,981,171 – 21,981,273 |
| Length | 102 |
| Max. P | 0.883581 |
| Location | 21,981,171 – 21,981,273 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 79.74 |
| Shannon entropy | 0.33730 |
| G+C content | 0.50364 |
| Mean single sequence MFE | -25.58 |
| Consensus MFE | -19.90 |
| Energy contribution | -20.02 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.883581 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21981171 102 + 22422827 AGUUACUGGCUUCAACCGGCACACUGACCCUCCAGCUAAGCCACCCCGGCUUACCCUAGGCGUAGUACAAAAUAACCAUAAUGUAAACAACGGAUUUAAUUA .((((((((......))))...((((..(((...(.((((((.....)))))).)..)))..))))......)))).......................... ( -16.90, z-score = 1.00, R) >droSim1.chrU 2701550 102 + 15797150 AGUUACCGGUGCCAACCGGCACACAGACCCUCCAGCAAAGCCACCCCGGCUUACCCUGGAAUUGGUACAAAGUAACCAAAACAUAAACACUGGGUUGAAUUA ........(((((....)))))...((((((((((..(((((.....)))))...))))).(((((........)))))............)))))...... ( -32.70, z-score = -2.74, R) >droSec1.super_61 146090 93 + 189864 AUGUACCGGUUCCAACCGGCACACAGACCCUCCAGCAAAGCCACCCCGGCUUACCCUGGAAUUGGUACAAAGCAACCAAAAUGUAAACACUGG--------- .(((.(((((....))))).)))(((....(((((..(((((.....)))))...))))).(((((........)))))..........))).--------- ( -29.30, z-score = -3.15, R) >droEre2.scaffold_4929 2661844 93 - 26641161 AGUUACCGGUCCCAGCCGGCACACAGACCCUCCAGCGAAGCCACCCCGGCUUACCCUGGAAUUAGUACAAAGCAACCAAAA---------UGGAUUGAAUUA .((..(((((....)))))...))......(((((.((((((.....))))).).)))))............(((((....---------.)).)))..... ( -23.40, z-score = -1.53, R) >consensus AGUUACCGGUUCCAACCGGCACACAGACCCUCCAGCAAAGCCACCCCGGCUUACCCUGGAAUUAGUACAAAGCAACCAAAAUGUAAACACUGGAUUGAAUUA .....(((((....))))).........(((((((..(((((.....)))))...))))).(((((........)))))............))......... (-19.90 = -20.02 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:29 2011