| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,929,861 – 21,929,955 |
| Length | 94 |
| Max. P | 0.657908 |
| Location | 21,929,861 – 21,929,955 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 78.65 |
| Shannon entropy | 0.39694 |
| G+C content | 0.44817 |
| Mean single sequence MFE | -28.84 |
| Consensus MFE | -12.60 |
| Energy contribution | -13.67 |
| Covariance contribution | 1.07 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.657908 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21929861 94 - 22422827 AGGCUGCUGAUUACUGGUCUCUGUCAUUUCUGCUGAUUGGCUGAGAUGAUUGGGUUAUGAUGAUCGGUGAUGUCACUGAUUCAUUGACAAGCUG .((((((((((((..(..(((.((((((((.(((....))).)))))))).)))...)..))))))))..(((((.((...)).))))))))). ( -32.10, z-score = -3.11, R) >droSec1.super_55 85746 91 - 187931 AGGCUGCUGAUUACUGGUCUCUGUCAUUUCUGCUGAUUGGCUGAGAUGAUUGGGAU---AUGAUCGGUGAUUUCACUGAUUCAUUGACAAGCUG .....(((..(((.(((((((.((((((((.(((....))).)))))))).)))))---..((((((((....)))))))))).)))..))).. ( -32.00, z-score = -3.62, R) >droSim1.chrX 16750391 91 - 17042790 AGGCUGCUGAUUACUGGUCUCUGUCAUUUCUGCUUAUUGGCUGAGAUGAUUGGGAU---AUGAUCGGUGAUUUCACUGAUUCAUUGACAAGCUG .....(((..(((.(((((((.((((((((.(((....))).)))))))).)))))---..((((((((....)))))))))).)))..))).. ( -32.10, z-score = -3.91, R) >droYak2.chrX 21369298 94 - 21770863 AGGCUGCUGAUUACUGGUCUCUAUCAUGGCUGCUGAUUGGCCGAGAUGAUUGGGUUAUGAUGAUAGGUGAUGUCACUGAUUCAUUGACAAGCUG .((((........(..(((...(((.(((((.......))))).))))))..)(((..(((((..((((....))))...)))))))).)))). ( -26.10, z-score = -0.75, R) >droEre2.scaffold_4690 18301422 93 - 18748788 AGGCUGCUGAUUACUGGUCUCUAUCAUUGCUGCUGAUUGGUUGAGAUGAUUGGG-UAUGAUGAUAGGUGGUGUCACUGAUUCAUUGACAAGCUG .((((.(..(((....(((((.((((...(....)..)))).))))))))..)(-(.((((((..((((....))))...)))))))).)))). ( -22.30, z-score = 0.14, R) >dp4.chrXL_group1a 8081583 92 + 9151740 CAUCUGGUGGCUGCUUGUCUCUGUCAUAUCUGGUGCAGGAAUGUGCUCUCUAAU-GAUGAUGACGAG-GAUGUCACUGGUUCAAUGACAAACUG ...(..((((((.((((((..((((((....((..((....))..)).....))-))))..))))))-.).)))))..)............... ( -27.90, z-score = -1.83, R) >droPer1.super_26 165994 92 + 1349181 CAUCUGGUGGCUGCUUGUCUCUGUCAUAUCUGGUGCAGUAAUGUGCUCUCUAAU-GAUGAUGACGAG-GAUGUCACUGGUUCAUUGACAAACUG ...(..((((((.((((((..((((((....((..((....))..)).....))-))))..))))))-.).)))))..)............... ( -29.40, z-score = -2.43, R) >consensus AGGCUGCUGAUUACUGGUCUCUGUCAUUUCUGCUGAUUGGCUGAGAUGAUUGGG_UAUGAUGAUCGGUGAUGUCACUGAUUCAUUGACAAGCUG .((((....((((((((((...(((((.....(((((((.......)))))))...)))))))))))))))((((.((...)).)))).)))). (-12.60 = -13.67 + 1.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:28 2011