| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,816,715 – 21,816,769 |
| Length | 54 |
| Max. P | 0.567147 |
| Location | 21,816,715 – 21,816,769 |
|---|---|
| Length | 54 |
| Sequences | 3 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 71.34 |
| Shannon entropy | 0.39614 |
| G+C content | 0.47811 |
| Mean single sequence MFE | -13.87 |
| Consensus MFE | -9.53 |
| Energy contribution | -9.87 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.567147 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21816715 54 - 22422827 AGAGAAGGGCGCUU-CGUAGUGCUGGGAUAAUAUCGAUUGUACUAUCGAGGUAUC .......((((((.-...))))))..((((...(((((......)))))..)))) ( -14.30, z-score = -1.48, R) >droSec1.super_53 61073 55 + 190754 AGAGCUGGGCUCUCAAGCGGAGCUGGGAAACUAUCGAUGCUACCAUCGAGGAAUC ....((.((((((.....)))))).))......((((((....))))))...... ( -16.50, z-score = -0.96, R) >droWil1.scaffold_181130 9440718 54 + 16660200 AAAAAUUAGCGCAG-AAUAGAGCUGGCAAACUAUCGAUGGCACUAUCGAGGUAUC ........((.(((-.......)))))..(((.((((((....)))))))))... ( -10.80, z-score = -1.01, R) >consensus AGAGAUGGGCGCUC_AGUAGAGCUGGGAAACUAUCGAUGGUACUAUCGAGGUAUC .......((((((.....)))))).........((((((....))))))...... ( -9.53 = -9.87 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:23 2011