| Sequence ID | dm3.chrX |
|---|---|
| Location | 21,800,481 – 21,800,572 |
| Length | 91 |
| Max. P | 0.644322 |
| Location | 21,800,481 – 21,800,572 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 72.76 |
| Shannon entropy | 0.37973 |
| G+C content | 0.34941 |
| Mean single sequence MFE | -20.57 |
| Consensus MFE | -14.53 |
| Energy contribution | -15.10 |
| Covariance contribution | 0.57 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.644322 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 21800481 91 + 22422827 UGUAGUAUGCACACAUAUCGGCUUAUUACUGUACCUAUAUAUAUAUUUAUAACAUACAAGCACAUUGUAGCACUCCGUUACAAUGUGUACA .((((((.((.(.......))).))))))((((..((((........))))...)))).((((((((((((.....))))))))))))... ( -22.90, z-score = -2.09, R) >droSim1.chrU 4106052 84 - 15797150 UGUAGUAUGCACA--UAUCGGUUAGUUACUGUAC-----UGUAUAAUCAUAACUUAGAAGCACAUUGUAGCACUCCGUUACAAUGUGUAAA ((...((((((..--...((((.....))))...-----))))))..))..........((((((((((((.....))))))))))))... ( -22.60, z-score = -1.90, R) >droEre2.scaffold_4845 22369509 75 - 22589142 UGUAGUAUGCACAUAUAGCGAUGUGCCACUGUA---------------AUAACA-ACAAACACAUUGUACCACUCUGUUGCAAAGUGUAUA ..((((..((((((......)))))).))))..---------------......-....((((.(((((.(.....).))))).))))... ( -16.20, z-score = 0.25, R) >consensus UGUAGUAUGCACA_AUAUCGGUUUGUUACUGUAC_____U_UAUA_U_AUAACAUACAAGCACAUUGUAGCACUCCGUUACAAUGUGUAAA .((((((.((..........)).))))))..............................((((((((((((.....))))))))))))... (-14.53 = -15.10 + 0.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:22 2011