Locus 15866

Sequence ID dm3.chrX
Location 21,800,169 – 21,800,232
Length 63
Max. P 0.951540
window21863 window21864

overview

Window 3

Location 21,800,169 – 21,800,232
Length 63
Sequences 3
Columns 63
Reading direction forward
Mean pairwise identity 55.03
Shannon entropy 0.65572
G+C content 0.50976
Mean single sequence MFE -17.20
Consensus MFE -6.40
Energy contribution -5.30
Covariance contribution -1.10
Combinations/Pair 1.50
Mean z-score -1.41
Structure conservation index 0.37
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.42
SVM RNA-class probability 0.689586
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 21800169 63 + 22422827
UGGAACCGUACCUCCGGUACACAGAUGCGGUCCUUCUGCAGGCCAGCAGAACCCCCGCAAUCC
.(((...(((((...))))).....(((((...((((((......))))))...))))).))) ( -23.10, z-score =  -2.84, R)
>droAna3.scaffold_13266 566172 55 - 19884421
UAGAUCCGUACCUUCAGUACAUGAAUAGGGUAUUACUCCUGCUGGAUAACAAUCC--------
...((((((((.....)))).....(((((......)))))..))))........-------- ( -10.70, z-score =  -0.47, R)
>droGri2.scaffold_15056 31672 63 - 38174
UCGAACCGUAUAUCGCGUAUAUGGAUGAGGUGCUACUACUGGCUAGUAGCGUUCCGUUCAUCC
..(((((((((((...))))))))....((((((((((.....))))))))..)).))).... ( -17.80, z-score =  -0.93, R)
>consensus
UAGAACCGUACCUCCAGUACAUGGAUGAGGUACUACUACUGGCCAGUAGCAAUCC____AUCC
.......((((.....))))........((..((((((.....))))))....))........ ( -6.40 =  -5.30 +  -1.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 4

Location 21,800,169 – 21,800,232
Length 63
Sequences 3
Columns 63
Reading direction reverse
Mean pairwise identity 55.03
Shannon entropy 0.65572
G+C content 0.50976
Mean single sequence MFE -18.23
Consensus MFE -10.24
Energy contribution -8.37
Covariance contribution -1.87
Combinations/Pair 1.72
Mean z-score -1.06
Structure conservation index 0.56
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.57
SVM RNA-class probability 0.951540
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 21800169 63 - 22422827
GGAUUGCGGGGGUUCUGCUGGCCUGCAGAAGGACCGCAUCUGUGUACCGGAGGUACGGUUCCA
(((.(((((...((((((......))))))...)))))....((((((...))))))..))). ( -25.70, z-score =  -1.22, R)
>droAna3.scaffold_13266 566172 55 + 19884421
--------GGAUUGUUAUCCAGCAGGAGUAAUACCCUAUUCAUGUACUGAAGGUACGGAUCUA
--------((((....)))).....(((((......))))).(((((.....)))))...... ( -10.10, z-score =   0.37, R)
>droGri2.scaffold_15056 31672 63 + 38174
GGAUGAACGGAACGCUACUAGCCAGUAGUAGCACCUCAUCCAUAUACGCGAUAUACGGUUCGA
((((((..((...(((((((.....))))))).)))))))).......(((........))). ( -18.90, z-score =  -2.35, R)
>consensus
GGAU____GGAAUGCUACUAGCCAGCAGUAGCACCCCAUCCAUGUACCGGAGGUACGGUUCCA
........((((((((((((.....)))))))..........((((((...))))))))))). (-10.24 =  -8.37 +  -1.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:07:21 2011